Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 4.5e-109 397.9 195 100.0
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 1.1e-59 233.8 143 72.7
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 1.1e-59 233.8 146 74.7
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 3.3e-59 232.3 149 71.8
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 7.3e-59 231.1 154 70.1
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 3.6e-58 228.8 150 71.3
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 4.7e-58 228.4 150 69.3
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 6.2e-58 228.0 149 69.1
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 8.0e-58 227.6 149 68.5
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 1.4e-57 226.9 149 68.5
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 2.3e-57 226.1 149 69.1
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 3.4e-56 222.2 144 70.8
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 4.4e-56 221.9 149 67.1
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 4.4e-56 221.9 158 67.1
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 9.8e-56 220.7 160 67.5
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 2.2e-55 219.5 146 70.5
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 8.3e-55 217.6 180 62.2
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 8.3e-55 217.6 144 70.8
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.1e-54 217.2 142 71.1
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 1.1e-54 217.2 147 68.0
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 1.4e-54 216.9 150 68.7
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.9e-54 216.5 159 67.3
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 3.2e-54 215.7 154 64.3
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 4.1e-54 215.3 157 65.6
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 7.0e-54 214.5 183 57.4
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 7.0e-54 214.5 140 68.6
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 2.0e-53 213.0 143 67.8
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 2.0e-53 213.0 142 66.2
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 2.7e-53 212.6 155 66.5
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 4.6e-53 211.8 155 62.6
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 4.6e-53 211.8 145 68.3
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 6.0e-53 211.5 158 62.7
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 1.0e-52 210.7 153 63.4
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.0e-52 210.7 153 66.7
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 1.3e-52 210.3 154 64.9
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 1.7e-52 209.9 150 64.7
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 3.9e-52 208.8 155 65.8
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 3.9e-52 208.8 145 68.3
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 5.0e-52 208.4 143 67.1
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 8.6e-52 207.6 146 67.1
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 8.6e-52 207.6 154 64.3
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 1.1e-51 207.2 143 66.4
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 2.5e-51 206.1 157 63.1
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 2.5e-51 206.1 152 63.8
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 2.5e-51 206.1 154 63.6
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 2.5e-51 206.1 145 68.3
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 2.5e-51 206.1 160 61.9
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 2.5e-51 206.1 154 62.3
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 4.3e-51 205.3 148 67.6
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 5.6e-51 204.9 154 63.0
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 7.3e-51 204.5 145 65.5
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 7.3e-51 204.5 145 65.5
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 7.3e-51 204.5 144 66.7
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 9.5e-51 204.1 142 66.9
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 1.2e-50 203.8 147 65.3
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 1.6e-50 203.4 185 56.8
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 2.8e-50 202.6 159 61.0
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 3.6e-50 202.2 144 65.3
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 6.2e-50 201.4 139 66.9
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 6.2e-50 201.4 150 62.7
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 8.1e-50 201.1 131 70.2
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 8.1e-50 201.1 145 64.1
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 8.1e-50 201.1 145 64.1
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 8.1e-50 201.1 145 64.1
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 8.1e-50 201.1 150 64.0
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 8.1e-50 201.1 142 66.9
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 8.1e-50 201.1 153 62.1
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 1.8e-49 199.9 146 65.1
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 3.1e-49 199.1 146 64.4
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 5.2e-49 198.4 146 63.0
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 5.2e-49 198.4 144 64.6
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 5.2e-49 198.4 137 67.9
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 6.8e-49 198.0 140 67.9
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 8.9e-49 197.6 156 60.3
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.5e-48 196.8 144 64.6
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 1.5e-48 196.8 195 57.4
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 2.0e-48 196.4 148 60.8
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 2.6e-48 196.1 150 59.3
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 3.4e-48 195.7 142 65.5
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 5.8e-48 194.9 152 64.5
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 1.7e-47 193.4 148 65.5
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 3.7e-47 192.2 138 65.9
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 3.2e-46 189.1 139 66.2
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 4.6e-45 185.3 147 60.5
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 6.0e-45 184.9 139 64.7
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 7.8e-45 184.5 153 60.8
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 2.5e-43 179.5 148 60.1
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 2.5e-43 179.5 148 60.1
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 2.1e-42 176.4 198 51.5
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 6.4e-39 164.9 136 55.9
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 6.4e-39 164.9 148 58.1
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.4e-38 163.7 146 54.8
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 1.3e-36 157.1 105 66.7
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 2.3e-36 156.4 137 54.7
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.1e-34 149.8 100 68.0
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.8e-34 149.4 98 69.4
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 6.2e-34 148.3 152 51.3
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 9.0e-33 144.4 136 50.7
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 2.6e-32 142.9 135 52.6
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 1.1e-30 137.5 135 52.6
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 7.1e-30 134.8 135 49.6
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 3.5e-29 132.5 145 50.3
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 6.0e-29 131.7 97 66.0
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 7.8e-29 131.3 149 48.3
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 1.0e-28 131.0 102 63.7
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 5.8e-24 115.2 138 49.3
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 1.0e-20 104.4 113 47.8
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.5e-19 100.5 103 54.4
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 1.3e-18 97.4 82 57.3
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 2.6e-16 89.7 158 37.3
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 1.9e-14 83.6 155 37.4
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 6.0e-13 78.6 75 49.3
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 1.6e-10 70.5 104 41.3


User provided reference genes

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