Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.9e-292 1008.4 504 100.0
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 6.4e-208 727.6 509 70.5
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 7.8e-206 720.7 510 71.4
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 4.0e-202 708.4 510 68.8
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.2e-201 706.8 512 69.9
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.5e-201 706.4 511 68.3
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.0e-201 706.1 511 67.9
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 4.4e-201 704.9 508 68.3
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.3e-200 703.4 511 68.5
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 6.4e-200 701.0 508 67.9
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.1e-199 700.3 513 68.0
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.4e-199 699.1 511 67.3
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 4.2e-199 698.4 513 68.4
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 5.4e-199 698.0 510 68.8
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 1.2e-198 696.8 515 67.0
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.2e-198 696.8 510 68.0
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.0e-197 693.7 511 66.9
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.1e-197 691.4 519 66.3
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 3.6e-195 685.3 507 67.7
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 8.1e-195 684.1 515 67.6
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.1e-194 683.7 510 67.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.8e-194 682.9 525 66.1
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 6.9e-194 681.0 508 66.7
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.5e-193 679.9 507 66.5
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.0e-193 679.5 511 65.9
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-192 676.8 510 65.5
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-192 676.8 510 65.5
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.3e-192 676.8 508 65.9
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 2.2e-192 676.0 512 65.4
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.2e-192 676.0 509 66.0
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.4e-191 673.3 511 66.3
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 7.1e-191 671.0 508 65.7
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 9.3e-191 670.6 509 65.8
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 9.3e-191 670.6 509 65.8
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.2e-190 670.2 512 65.4
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.1e-190 669.5 511 65.6
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 2.1e-190 669.5 513 65.7
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.5e-190 668.7 511 65.8
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.5e-190 668.7 513 65.1
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 4.6e-190 668.3 513 66.1
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 7.9e-190 667.5 509 65.6
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.0e-189 667.2 512 66.4
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 3.9e-189 665.2 535 63.0
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 3.9e-189 665.2 510 66.1
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 8.7e-189 664.1 509 66.2
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.5e-188 663.3 511 64.2
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 3.3e-188 662.1 510 64.7
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 3.6e-187 658.7 516 64.5
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.6e-187 658.7 515 65.2
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 4.8e-187 658.3 570 61.2
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 6.2e-187 657.9 504 65.3
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 6.2e-187 657.9 511 64.6
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 8.1e-187 657.5 511 65.4
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 3.1e-186 655.6 498 64.9
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 2.0e-185 652.9 510 65.3
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 5.8e-185 651.4 519 64.4
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 7.6e-185 651.0 508 64.8
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 7.6e-185 651.0 510 62.9
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 7.6e-185 651.0 507 64.9
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.3e-184 650.2 508 64.8
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.7e-184 649.8 508 64.6
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 1.7e-184 649.8 503 65.2
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 4.9e-184 648.3 507 65.3
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 4.9e-184 648.3 508 65.0
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 6.4e-184 647.9 507 64.3
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 8.4e-184 647.5 595 58.3
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 2.4e-183 646.0 511 64.0
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 3.2e-183 645.6 507 64.3
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 3.2e-183 645.6 509 64.2
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 3.2e-183 645.6 508 65.0
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 4.2e-183 645.2 508 65.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 9.3e-183 644.0 507 64.7
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.2e-182 643.7 494 65.6
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.6e-182 643.3 510 63.7
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 3.5e-182 642.1 510 63.7
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.8e-181 639.8 460 69.3
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.3e-180 635.6 517 63.4
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.6e-179 633.3 507 64.3
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 8.1e-179 630.9 509 63.1
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.4e-178 630.2 509 64.0
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 4.5e-177 625.2 505 62.4
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 5.8e-177 624.8 454 68.5
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.4e-175 620.2 469 65.5
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.9e-175 619.8 513 62.0
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 2.5e-175 619.4 508 63.6
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 5.5e-175 618.2 479 64.7
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 5.5e-175 618.2 433 70.4
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 2.1e-174 616.3 519 60.1
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 4.6e-174 615.1 506 60.7
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.3e-173 612.8 466 65.5
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 3.0e-173 612.5 506 59.9
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 7.4e-172 607.8 556 57.9
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 9.6e-172 607.4 508 61.6
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 2.8e-171 605.9 548 58.2
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 6.3e-171 604.7 439 68.6
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.5e-169 600.1 434 68.4
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 5.0e-168 595.1 518 61.0
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.0e-165 585.9 495 60.6
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 3.9e-165 585.5 551 57.7
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 9.7e-164 580.9 453 63.1
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.7e-161 571.2 433 66.1
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 4.6e-158 562.0 427 65.1
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.0e-156 556.6 456 60.7
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 5.9e-145 518.5 356 71.3
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.0e-144 517.7 472 54.7
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.1e-143 514.2 504 54.0
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.0e-141 506.1 379 67.0
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 6.3e-139 498.4 371 67.7
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 7.0e-138 495.0 414 61.6
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-131 474.2 448 56.0
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 3.2e-127 459.5 385 61.6
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 3.1e-122 443.0 515 46.6
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 4.4e-116 422.5 488 50.0
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 9.2e-114 414.8 368 58.4
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 6.6e-112 408.7 437 50.1
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.1e-106 389.4 496 45.8
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 3.0e-104 383.3 390 54.4
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.2e-98 363.2 276 64.1
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.7e-89 333.6 328 55.5
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 2.2e-75 287.3 417 44.8
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.2e-75 287.3 461 38.6
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.1e-74 285.0 465 38.5
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 4.8e-70 269.6 481 38.9
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 3.5e-65 253.4 237 57.4
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.2e-60 238.4 367 37.3
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.9e-59 233.8 211 57.3
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 4.8e-54 216.5 495 32.3
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 4.6e-49 199.9 156 65.4
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.4e-40 171.8 211 45.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 5.3e-37 159.8 252 39.7
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.9e-35 154.1 102 72.5
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 2.6e-31 141.0 119 63.9
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 9.7e-31 139.0 147 53.1
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 8.2e-22 109.4 344 25.0
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.6e-20 105.1 106 55.7
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-14 85.5 55 76.4
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.8e-11 73.9 44 70.5
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 3.8e-11 73.9 49 73.5
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 7.2e-10 69.7 68 58.8
Sc01g0008120 Simmondsia chinensis HOM05D000686 ORTHO05D000512 6.3e-06 56.6 415 25.1


User provided reference genes

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