Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 4.3e-267 924.1 462 100.0
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.9e-221 770.4 464 81.2
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.1e-217 760.0 455 82.9
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 5.3e-217 757.7 466 79.6
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.9e-215 751.9 432 84.5
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 5.0e-215 751.1 449 83.3
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 4.2e-214 748.0 450 81.8
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 9.3e-214 746.9 451 80.5
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.6e-213 746.1 463 80.8
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.5e-213 745.0 466 79.2
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 4.6e-213 744.6 435 83.4
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.3e-212 743.0 462 78.8
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 1.3e-212 743.0 449 82.0
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 5.1e-212 741.1 445 80.4
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 6.7e-212 740.7 449 81.5
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 8.7e-212 740.3 444 81.1
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 8.7e-212 740.3 460 79.6
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.5e-211 739.6 460 79.8
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 7.4e-211 737.3 429 83.0
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 9.7e-211 736.9 457 79.0
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.3e-210 736.5 455 80.4
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.3e-210 736.5 455 80.4
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 2.2e-210 735.7 462 78.4
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 2.8e-210 735.3 461 79.8
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.1e-209 733.4 463 78.6
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 2.4e-209 732.3 441 78.9
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 3.1e-209 731.9 462 77.7
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.0e-208 729.2 448 80.1
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 4.5e-208 728.0 439 80.6
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 7.7e-208 727.2 448 78.3
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 5.0e-207 724.5 439 79.5
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 1.1e-206 723.4 459 76.9
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.1e-206 723.4 446 79.6
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 1.4e-206 723.0 456 77.4
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.9e-206 722.6 448 78.3
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.9e-206 722.6 458 76.2
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.9e-206 722.6 439 80.2
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 2.5e-206 722.2 471 77.1
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.5e-206 721.1 450 78.9
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.5e-206 721.1 450 78.9
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.2e-206 720.7 441 78.7
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 9.4e-206 720.3 454 78.0
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.6e-205 719.5 427 82.0
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 2.7e-205 718.8 428 80.1
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 2.7e-205 718.8 438 79.9
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 6.1e-205 717.6 427 80.3
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 6.1e-205 717.6 459 77.1
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 6.1e-205 717.6 452 78.3
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 6.1e-205 717.6 449 76.8
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 6.1e-205 717.6 450 78.2
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 6.1e-205 717.6 450 78.2
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.0e-204 716.8 462 76.2
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.4e-204 716.5 448 77.0
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 1.8e-204 716.1 440 79.1
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 2.3e-204 715.7 450 78.4
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 3.0e-204 715.3 437 79.6
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.1e-203 713.4 458 77.1
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.3e-203 711.4 444 78.2
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 9.7e-203 710.3 450 77.6
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 9.7e-203 710.3 439 78.4
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.7e-202 709.5 450 78.0
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.2e-202 709.1 453 75.9
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 2.2e-202 709.1 444 77.5
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 2.8e-202 708.8 453 76.2
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.7e-202 708.4 441 78.2
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 4.8e-202 708.0 429 79.3
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 6.3e-202 707.6 442 77.4
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.4e-201 706.4 457 74.4
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 1.2e-200 703.4 451 75.6
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 2.0e-200 702.6 442 77.1
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 2.6e-200 702.2 447 75.8
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 2.6e-200 702.2 435 77.9
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 5.9e-200 701.0 439 77.9
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.0e-199 700.3 413 83.8
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.3e-199 699.9 449 75.9
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 2.9e-199 698.7 448 76.3
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 2.9e-199 698.7 440 77.3
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 8.5e-199 697.2 455 75.8
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 8.5e-199 697.2 455 75.6
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 2.5e-198 695.7 437 78.0
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.2e-198 695.3 464 73.3
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 3.2e-198 695.3 454 75.3
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 9.4e-198 693.7 467 74.1
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.6e-197 693.0 459 74.1
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.6e-197 693.0 455 75.2
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.7e-197 692.2 433 77.6
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 3.6e-197 691.8 429 78.1
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 6.1e-197 691.0 470 73.4
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 7.9e-197 690.6 431 78.0
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.0e-196 690.3 441 75.5
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 1.0e-196 690.3 460 73.9
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.0e-196 690.3 440 77.3
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 1.4e-196 689.9 423 78.3
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 6.7e-196 687.6 439 76.1
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.5e-195 686.4 439 75.2
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.0e-195 686.0 430 77.9
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 3.3e-195 685.3 436 76.6
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 5.7e-195 684.5 436 76.1
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 5.7e-195 684.5 430 77.9
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.7e-194 682.9 437 76.7
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.7e-194 682.9 437 76.7
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.7e-194 682.9 453 75.3
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 2.8e-194 682.2 438 76.0
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.8e-194 682.2 434 76.3
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 2.8e-194 682.2 449 73.9
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.7e-194 681.8 438 76.3
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 4.8e-194 681.4 430 76.5
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 4.8e-194 681.4 448 73.9
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 6.3e-194 681.0 434 76.3
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 8.2e-194 680.6 441 76.4
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 8.2e-194 680.6 437 76.2
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 1.1e-193 680.2 455 73.8
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 1.1e-193 680.2 443 74.7
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 1.4e-193 679.9 436 75.9
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-193 679.9 459 72.1
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 2.4e-193 679.1 441 76.4
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 9.1e-193 677.2 434 76.0
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 2.0e-192 676.0 465 71.6
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 5.9e-192 674.5 437 74.1
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 2.9e-191 672.2 441 75.5
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 6.5e-191 671.0 401 80.0
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 9.4e-190 667.2 401 79.8
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 9.4e-190 667.2 437 73.9
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.7e-189 665.6 450 73.3
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 6.1e-189 664.5 455 72.1
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 6.1e-189 664.5 444 72.7
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.0e-188 662.1 437 73.9
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 3.0e-188 662.1 438 74.0
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 5.2e-188 661.4 445 73.0
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.8e-186 655.6 409 78.0
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 4.5e-184 648.3 427 74.9
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 6.5e-183 644.4 439 73.6
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 4.7e-181 638.3 438 71.7
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.5e-179 633.3 382 79.6
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 9.1e-177 624.0 371 80.3
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.6e-176 623.2 442 68.1
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.5e-176 622.1 444 69.6
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 5.0e-175 618.2 364 81.0
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 6.5e-175 617.8 381 80.3
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.0e-172 610.5 384 76.0
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.8e-172 609.8 431 67.7
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 3.0e-172 609.0 388 76.3
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.3e-162 577.0 442 67.9
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 1.0e-159 567.4 385 72.5
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-154 550.4 422 64.9
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.4e-147 525.8 421 62.0
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.5e-147 524.6 445 62.9
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.2e-145 519.2 436 60.8
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.1e-136 490.0 454 57.3
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.6e-133 479.2 432 55.6
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 5.4e-121 438.7 314 67.8
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 2.5e-118 429.9 282 74.5
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 3.1e-116 422.9 433 51.0
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.1e-110 404.4 272 71.3
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 1.2e-104 384.4 235 77.0
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.6e-101 374.0 440 45.5
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 3.7e-101 372.9 232 75.9
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.0e-99 367.1 424 47.2
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 5.7e-94 349.0 381 48.3
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.1e-76 290.0 281 59.1
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 2.8e-69 266.9 158 81.0
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.8e-55 221.1 149 75.8
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 7.5e-46 189.1 126 72.2
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.2e-45 187.6 112 79.5
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 4.1e-44 183.3 451 31.7
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.5e-38 164.9 93 80.6
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 5.8e-38 162.9 463 30.2
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 1.9e-25 121.3 84 66.7
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.8e-24 117.5 77 70.1
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 6.2e-16 89.7 72 63.9
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 2.6e-14 84.3 79 55.7
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.1e-09 68.9 193 28.0
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.6e-08 65.1 43 69.8
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.6e-08 63.9 43 67.4
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.5e-06 58.5 193 23.8
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 4.5e-06 57.0 196 24.5
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 4.5e-06 57.0 195 24.1
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 5.8e-06 56.6 195 23.6
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 9.9e-06 55.8 333 22.8


User provided reference genes

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