Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 3.6e-132 474.9 246 100.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 3.0e-86 322.4 217 76.0
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 9.7e-85 317.4 215 76.3
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.3e-84 317.0 228 75.4
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.3e-84 317.0 200 80.0
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.7e-84 316.6 223 72.2
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 2.2e-84 316.2 217 76.0
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 4.8e-84 315.1 212 76.9
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 4.8e-84 315.1 217 75.6
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 6.3e-84 314.7 223 74.0
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 6.3e-84 314.7 197 80.2
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.4e-83 313.5 252 68.7
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.8e-83 313.2 203 80.8
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 2.4e-83 312.8 250 67.2
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.1e-83 312.4 250 67.2
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.1e-83 312.4 250 67.2
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 3.1e-83 312.4 250 68.0
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 4.1e-83 312.0 219 74.4
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 4.1e-83 312.0 232 71.6
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.3e-83 311.6 250 66.8
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.3e-83 311.6 220 72.7
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.0e-83 311.2 251 68.9
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.0e-83 311.2 251 68.9
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.2e-82 310.5 233 71.7
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-82 310.5 250 66.8
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.2e-82 310.5 220 72.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 2.0e-82 309.7 217 73.7
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.0e-82 309.7 232 73.7
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 3.5e-82 308.9 219 72.6
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.5e-82 308.9 235 70.6
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 5.9e-82 308.1 202 77.7
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 5.9e-82 308.1 199 79.4
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.0e-81 307.4 220 71.8
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.3e-81 307.0 219 71.7
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 2.2e-81 306.2 232 70.3
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 2.9e-81 305.8 225 72.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 5.0e-81 305.1 203 76.8
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 6.5e-81 304.7 199 75.9
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 8.5e-81 304.3 246 65.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.1e-80 303.9 217 72.8
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.1e-80 303.9 217 72.8
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.2e-80 302.4 217 72.4
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 3.2e-80 302.4 222 71.6
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 7.2e-80 301.2 251 66.1
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 1.2e-79 300.4 220 70.9
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 1.2e-79 300.4 220 70.9
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.2e-79 300.4 199 74.9
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.6e-79 300.1 194 76.8
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 3.6e-79 298.9 240 73.3
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.6e-79 298.9 204 74.5
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 6.1e-79 298.1 203 73.9
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.8e-78 296.6 247 66.0
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 2.3e-78 296.2 200 75.5
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.3e-78 296.2 216 72.2
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.3e-78 296.2 223 69.5
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 5.2e-78 295.0 217 72.8
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 6.8e-78 294.7 194 77.3
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 8.8e-78 294.3 214 70.6
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 8.8e-78 294.3 227 72.2
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.6e-77 292.7 212 71.2
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 2.6e-77 292.7 209 69.4
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 5.7e-77 291.6 209 70.8
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.7e-77 291.6 217 69.6
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.3e-76 290.4 224 68.3
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 3.7e-76 288.9 207 72.9
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 6.3e-76 288.1 202 72.8
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.1e-75 287.3 220 69.1
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.4e-75 287.0 224 68.8
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.8e-75 286.6 203 72.9
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 3.1e-75 285.8 198 72.7
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 4.1e-75 285.4 245 64.5
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 5.4e-75 285.0 194 75.3
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 7.0e-75 284.6 194 75.3
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 7.0e-75 284.6 194 74.7
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 9.1e-75 284.3 208 71.6
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.2e-74 283.9 201 71.1
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 2.7e-74 282.7 246 67.1
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.7e-74 282.7 221 65.6
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 4.5e-74 282.0 202 71.8
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.7e-73 280.0 195 73.3
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.1e-72 277.3 223 66.8
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 3.2e-72 275.8 228 64.5
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 5.5e-72 275.0 197 70.1
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 9.4e-72 274.2 214 66.4
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.1e-71 273.1 190 70.5
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 2.1e-71 273.1 214 65.9
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 3.6e-71 272.3 206 70.9
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.7e-71 271.9 222 64.9
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 6.1e-71 271.6 209 65.6
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.4e-70 270.4 235 62.1
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.4e-70 270.4 206 70.4
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.3e-70 269.6 220 64.1
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.0e-70 269.2 229 62.9
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 8.8e-70 267.7 212 64.6
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.2e-69 267.3 213 64.8
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.2e-69 267.3 188 71.8
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 2.6e-69 266.2 212 64.6
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 3.4e-69 265.8 211 64.9
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 9.8e-69 264.2 213 64.3
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 9.8e-69 264.2 213 63.8
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.2e-68 263.1 213 63.4
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.8e-68 262.7 213 63.4
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.8e-68 262.7 213 63.4
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 2.8e-68 262.7 213 63.8
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.8e-68 262.7 213 63.4
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.8e-68 262.7 213 63.4
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 2.8e-68 262.7 213 63.8
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 3.7e-68 262.3 189 72.0
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.9e-68 261.9 213 63.4
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 8.3e-68 261.2 213 62.9
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-67 260.8 214 64.0
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.4e-67 259.6 205 65.4
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 3.1e-67 259.2 213 62.9
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.1e-67 259.2 234 61.5
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 7.0e-67 258.1 207 64.3
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.7e-66 256.1 220 61.4
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 2.7e-66 256.1 214 63.6
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 7.7e-66 254.6 193 65.3
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.7e-65 253.4 216 63.9
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.0e-65 251.9 202 63.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 8.9e-62 241.1 214 58.9
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 8.9e-62 241.1 207 60.9
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.4e-59 233.8 197 61.9
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.9e-57 225.7 193 58.0
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 4.3e-56 222.2 252 54.8
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 6.2e-55 218.4 164 66.5
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 3.4e-53 212.6 138 75.4
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.3e-52 210.7 225 59.6
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.4e-51 206.5 183 61.7
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 9.2e-51 204.5 173 61.3
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.1e-42 176.8 200 53.0
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 6.0e-42 175.3 209 51.7
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 7.8e-42 174.9 117 73.5
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 7.3e-40 168.3 116 69.8
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.1e-39 166.8 136 64.7
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.2e-37 161.0 107 75.7
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 6.6e-33 145.2 107 68.2
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 7.3e-32 141.7 91 72.5
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 4.8e-15 85.9 64 67.2
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 5.3e-14 82.4 97 51.5
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 1.4e-06 57.8 172 28.5
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.1e-06 56.6 142 27.5
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.1e-06 56.6 142 27.5
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 5.3e-06 55.8 160 31.2


User provided reference genes

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