Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 6.8e-44 180.6 118 100.0
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 8.4e-18 94.0 87 63.2
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 5.4e-17 91.3 87 62.1
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.2e-16 90.1 94 56.4
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 1.2e-16 90.1 92 57.6
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 2.1e-16 89.4 113 60.2
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 7.9e-16 87.4 86 57.0
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 1.0e-15 87.0 114 63.2
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 1.3e-15 86.7 85 57.6
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.3e-15 86.7 87 56.3
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.8e-15 86.3 114 53.5
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.8e-15 86.3 80 70.0
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 2.3e-15 85.9 84 58.3
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 8.7e-15 84.0 82 57.3
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 8.7e-15 84.0 107 54.2
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.5e-14 83.2 100 50.0
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.9e-14 82.8 90 51.1
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 2.5e-14 82.4 81 59.3
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.3e-14 82.0 112 45.5
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 4.3e-14 81.6 100 54.0
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 4.3e-14 81.6 92 51.1
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 5.6e-14 81.3 81 56.8
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 7.4e-14 80.9 93 52.7
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 7.4e-14 80.9 94 48.9
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.3e-13 80.1 88 59.1
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.3e-13 80.1 104 49.0
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 1.6e-13 79.7 80 56.2
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 1.6e-13 79.7 85 54.1
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.8e-13 79.0 80 55.0
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 2.8e-13 79.0 90 60.0
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 2.8e-13 79.0 95 53.7
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 2.8e-13 79.0 85 58.8
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 2.8e-13 79.0 87 71.3
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 3.7e-13 78.6 95 52.6
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 6.2e-13 77.8 79 57.0
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 6.2e-13 77.8 86 55.8
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.1e-12 77.0 88 48.9
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.1e-12 77.0 89 52.8
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.4e-12 76.6 77 64.9
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 1.4e-12 76.6 86 53.5
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.4e-12 76.6 87 52.9
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.4e-12 76.6 87 52.9
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.8e-12 76.3 91 64.8
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.8e-12 76.3 98 59.2
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.4e-12 75.9 79 55.7
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 2.4e-12 75.9 87 59.8
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.4e-12 75.9 85 55.3
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.4e-12 75.9 94 48.9
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.1e-12 75.5 81 61.7
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 3.1e-12 75.5 86 52.3
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 3.1e-12 75.5 86 52.3
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 3.1e-12 75.5 82 52.4
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 4.0e-12 75.1 86 59.3
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 5.3e-12 74.7 109 45.0
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.3e-12 74.7 99 47.5
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 6.9e-12 74.3 91 48.4
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.9e-12 74.3 86 59.3
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 9.0e-12 73.9 79 53.2
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 9.0e-12 73.9 74 56.8
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 2.0e-11 72.8 87 50.6
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.6e-11 72.4 98 48.0
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 2.6e-11 72.4 91 57.1
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.6e-11 72.4 86 50.0
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.6e-11 72.4 86 52.3
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 3.4e-11 72.0 81 61.7
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.4e-11 72.0 102 51.0
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 3.4e-11 72.0 104 48.1
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 3.4e-11 72.0 104 51.0
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 3.4e-11 72.0 99 48.5
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 3.4e-11 72.0 111 46.8
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.5e-11 71.6 95 56.8
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 4.5e-11 71.6 83 63.9
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.5e-11 71.6 94 55.3
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.5e-11 71.6 86 58.1
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 5.8e-11 71.2 84 48.8
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.8e-11 71.2 97 53.6
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 5.8e-11 71.2 97 52.6
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 7.6e-11 70.9 95 47.4
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 7.6e-11 70.9 114 57.9
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 7.6e-11 70.9 87 54.0
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 7.6e-11 70.9 87 49.4
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 7.6e-11 70.9 83 45.8
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 9.9e-11 70.5 83 49.4
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 9.9e-11 70.5 108 54.6
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 9.9e-11 70.5 110 59.1
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 9.9e-11 70.5 87 47.1
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 9.9e-11 70.5 99 47.5
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 1.3e-10 70.1 83 55.4
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.3e-10 70.1 79 50.6
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 2.2e-10 69.3 83 48.2
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 2.9e-10 68.9 83 55.4
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 2.9e-10 68.9 83 55.4
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 2.9e-10 68.9 84 50.0
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 3.8e-10 68.6 93 46.2
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.8e-10 68.6 92 57.6
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 3.8e-10 68.6 79 60.8
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 3.8e-10 68.6 80 50.0
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.8e-10 68.6 86 52.3
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 4.9e-10 68.2 83 49.4
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 6.4e-10 67.8 102 53.9
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 6.4e-10 67.8 93 45.2
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 6.4e-10 67.8 86 61.6
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 8.4e-10 67.4 53 64.2
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 8.4e-10 67.4 91 54.9
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 8.4e-10 67.4 82 51.2
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 1.1e-09 67.0 85 45.9
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.1e-09 67.0 50 70.0
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.1e-09 67.0 92 56.5
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.1e-09 67.0 92 56.5
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 1.9e-09 66.2 53 64.2
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 1.9e-09 66.2 79 48.1
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.4e-09 65.9 81 58.0
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 2.4e-09 65.9 81 58.0
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.4e-09 65.9 100 54.0
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 2.4e-09 65.9 91 44.0
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.2e-09 65.5 87 44.8
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 4.2e-09 65.1 86 61.6
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.1e-09 64.3 92 55.4
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 7.1e-09 64.3 116 39.7
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 9.3e-09 63.9 53 60.4
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 9.3e-09 63.9 97 52.6
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.2e-08 63.5 53 56.6
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.2e-08 63.5 75 49.3
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 1.6e-08 63.2 111 51.4
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 1.6e-08 63.2 53 66.0
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 2.1e-08 62.8 99 51.5
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 2.1e-08 62.8 87 56.3
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 7.9e-08 60.8 78 46.2
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 7.9e-08 60.8 78 46.2
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 7.9e-08 60.8 84 53.6
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 7.9e-08 60.8 95 40.0
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.0e-07 60.5 78 46.2
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.0e-07 60.5 78 46.2
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 1.0e-07 60.5 79 45.6
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.3e-07 60.1 78 46.2
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.3e-07 60.1 78 46.2
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 1.8e-07 59.7 78 44.9
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 1.8e-07 59.7 78 44.9
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 1.8e-07 59.7 78 44.9
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 1.8e-07 59.7 78 44.9
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 1.8e-07 59.7 78 44.9
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 1.8e-07 59.7 79 59.5
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 1.8e-07 59.7 83 44.6
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 2.3e-07 59.3 80 40.0
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 3.0e-07 58.9 78 44.9
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 3.0e-07 58.9 53 56.6
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 3.9e-07 58.5 81 53.1
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 3.9e-07 58.5 78 44.9
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 5.1e-07 58.2 78 44.9
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 5.1e-07 58.2 78 44.9
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 5.1e-07 58.2 78 44.9
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 5.1e-07 58.2 78 44.9
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 5.1e-07 58.2 78 44.9
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 5.1e-07 58.2 96 59.4
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 8.7e-07 57.4 78 44.9
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 8.7e-07 57.4 78 44.9
Os10g0509401 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 8.7e-07 57.4 104 51.0
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.5e-06 56.6 77 42.9
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.5e-06 56.6 89 39.3
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.9e-06 56.2 85 41.2
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.9e-06 56.2 85 41.2
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 2.5e-06 55.8 88 39.8
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.5e-06 55.8 88 37.5
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.5e-06 55.8 97 47.4
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 7.4e-06 54.3 78 43.6
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 7.4e-06 54.3 78 55.1
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 7.4e-06 54.3 52 59.6
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 9.6e-06 53.9 78 41.0
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 9.6e-06 53.9 78 42.3


User provided reference genes

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