Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 3.9e-50 203.4 470 100.0
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 1.2e-22 112.1 82 68.3
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 1.9e-20 104.8 82 64.6
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 3.2e-20 104.0 79 63.3
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 7.2e-20 102.8 72 68.1
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 9.4e-20 102.4 77 62.3
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 2.7e-19 100.9 68 67.6
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 1.4e-18 98.6 71 64.8
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 2.3e-18 97.8 79 62.0
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 2.3e-18 97.8 79 62.0
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 2.3e-18 97.8 68 66.2
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 3.0e-18 97.4 79 62.0
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 5.2e-18 96.7 80 60.0
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 5.2e-18 96.7 78 61.5
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 5.2e-18 96.7 77 62.3
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 6.7e-18 96.3 68 63.2
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 6.7e-18 96.3 64 70.3
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 6.7e-18 96.3 64 70.3
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 8.8e-18 95.9 64 68.8
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.1e-17 95.5 69 62.3
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.1e-17 95.5 68 61.8
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 1.1e-17 95.5 68 69.1
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.1e-17 95.5 77 62.3
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.5e-17 95.1 79 60.8
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 1.5e-17 95.1 71 60.6
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 2.0e-17 94.7 68 66.2
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.0e-17 94.7 80 60.0
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 2.0e-17 94.7 68 69.1
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 2.0e-17 94.7 71 60.6
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.6e-17 94.4 79 59.5
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.6e-17 94.4 79 59.5
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 2.6e-17 94.4 79 55.7
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 3.3e-17 94.0 77 58.4
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 5.7e-17 93.2 77 61.0
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 7.4e-17 92.8 68 60.3
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 7.4e-17 92.8 68 64.7
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 7.4e-17 92.8 71 57.7
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 9.7e-17 92.4 68 52.9
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 9.7e-17 92.4 64 60.9
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 9.7e-17 92.4 80 56.2
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.3e-16 92.0 78 59.0
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 1.3e-16 92.0 65 63.1
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 1.3e-16 92.0 72 61.1
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 1.7e-16 91.7 68 66.2
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.7e-16 91.7 79 58.2
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 1.7e-16 91.7 68 58.8
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 2.8e-16 90.9 76 60.5
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.8e-16 90.9 68 61.8
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 2.8e-16 90.9 68 60.3
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 2.8e-16 90.9 68 63.2
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 3.7e-16 90.5 80 58.8
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 3.7e-16 90.5 68 64.7
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 4.8e-16 90.1 77 61.0
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 6.3e-16 89.7 72 62.5
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 6.3e-16 89.7 68 57.4
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 8.2e-16 89.4 64 64.1
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 8.2e-16 89.4 76 56.6
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.1e-15 89.0 68 58.8
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.1e-15 89.0 78 56.4
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.8e-15 88.2 64 62.5
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 2.4e-15 87.8 59 66.1
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 2.4e-15 87.8 59 66.1
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 2.4e-15 87.8 78 56.4
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 3.1e-15 87.4 63 61.9
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 3.1e-15 87.4 63 61.9
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 3.1e-15 87.4 68 61.8
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 5.3e-15 86.7 76 59.2
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 9.1e-15 85.9 63 60.3
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.2e-14 85.5 64 62.5
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 1.2e-14 85.5 77 55.8
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 1.6e-14 85.1 68 61.8
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 1.6e-14 85.1 70 58.6
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.0e-14 84.7 79 53.2
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 2.6e-14 84.3 63 61.9
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 2.6e-14 84.3 63 61.9
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 3.5e-14 84.0 64 57.8
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 3.5e-14 84.0 59 54.2
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 3.5e-14 84.0 79 51.9
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 4.5e-14 83.6 68 57.4
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 4.5e-14 83.6 63 61.9
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 4.5e-14 83.6 78 51.3
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 5.9e-14 83.2 69 55.1
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 5.9e-14 83.2 77 53.2
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 7.7e-14 82.8 70 55.7
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.3e-13 82.0 64 60.9
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 1.3e-13 82.0 52 67.3
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.2e-13 81.3 71 50.7
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 3.8e-13 80.5 71 49.3
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 3.8e-13 80.5 79 50.6
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 6.5e-13 79.7 79 51.9
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 8.5e-13 79.3 78 51.3
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 8.5e-13 79.3 76 50.0
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 1.1e-12 79.0 78 55.1
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 1.5e-12 78.6 70 50.0
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 1.5e-12 78.6 77 53.2
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 1.5e-12 78.6 68 52.9
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 2.5e-12 77.8 63 55.6
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 7.2e-12 76.3 71 50.7
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 2.7e-11 74.3 77 49.4
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 6.1e-11 73.2 79 46.8
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.0e-10 72.4 70 51.4
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 1.0e-10 72.4 79 43.0
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.8e-10 71.6 78 47.4
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.8e-10 71.6 78 47.4
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.3e-10 71.2 77 44.2
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.3e-10 71.2 54 61.1
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.3e-10 71.2 54 61.1
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 2.3e-10 71.2 69 52.2
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 5.2e-10 70.1 48 70.8
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 5.2e-10 70.1 48 70.8
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 5.2e-10 70.1 48 70.8
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 5.2e-10 70.1 73 47.9
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 6.8e-10 69.7 47 72.3
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 8.8e-10 69.3 73 50.7
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 8.8e-10 69.3 48 68.8
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 8.8e-10 69.3 43 72.1
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.2e-09 68.9 77 41.6
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.6e-09 67.8 76 46.1
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 3.4e-09 67.4 47 70.2
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.4e-09 67.4 79 40.5
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 1.7e-08 65.1 48 62.5
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 2.8e-08 64.3 45 66.7
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 4.8e-08 63.5 50 60.0
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 1.1e-07 62.4 42 66.7
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.1e-07 60.8 40 67.5
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 4.1e-07 60.5 47 55.3
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 9.1e-07 59.3 77 46.8
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 9.1e-07 59.3 40 67.5
Lalb_Chr06g0171701 Lupinus albus HOM05D005674 ORTHO05D007015 3.5e-06 57.4 42 61.9


User provided reference genes

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