Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 2.8e-95 352.1 195 100.0
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 4.7e-66 255.0 194 74.7
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 2.4e-62 242.7 191 70.2
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 3.6e-58 228.8 191 66.5
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.4e-57 226.9 192 67.2
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 4.0e-57 225.3 195 68.2
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 5.2e-57 224.9 198 68.2
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 1.5e-56 223.4 193 67.9
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 2.6e-56 222.6 198 67.2
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 2.6e-56 222.6 193 65.8
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 3.4e-56 222.2 202 65.8
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 4.4e-56 221.9 192 66.1
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.3e-55 220.3 191 67.0
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 1.3e-55 220.3 190 65.8
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.1e-54 217.2 192 66.7
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 3.2e-54 215.7 190 66.8
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 7.0e-54 214.5 196 65.3
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 9.2e-54 214.2 197 67.0
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 1.6e-53 213.4 194 64.4
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 4.6e-53 211.8 195 66.7
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 4.6e-53 211.8 191 66.5
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 1.7e-52 209.9 198 62.1
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.7e-52 209.9 196 63.3
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.3e-52 209.5 191 64.9
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 8.6e-52 207.6 195 63.6
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 8.6e-52 207.6 183 65.6
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 8.6e-52 207.6 190 64.2
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 1.9e-51 206.5 195 63.6
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 2.5e-51 206.1 197 64.0
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.5e-51 206.1 196 62.8
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 3.3e-51 205.7 192 62.0
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.3e-51 205.7 192 62.0
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.3e-51 205.3 192 62.0
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.6e-50 203.4 192 61.5
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 2.8e-50 202.6 194 63.4
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 8.1e-50 201.1 192 60.9
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 3.1e-49 199.1 189 64.0
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.2e-48 197.2 196 60.7
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 2.6e-48 196.1 199 60.3
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 2.6e-48 196.1 192 59.4
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 5.8e-48 194.9 197 61.4
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 5.8e-48 194.9 196 61.2
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 5.8e-48 194.9 196 63.3
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 1.7e-47 193.4 200 60.5
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 2.9e-47 192.6 191 60.7
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 6.4e-47 191.4 200 60.5
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.4e-47 191.4 192 59.4
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 8.3e-47 191.0 195 61.0
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.4e-46 190.3 192 60.4
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 5.4e-46 188.3 192 60.4
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 2.1e-45 186.4 192 59.9
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 3.5e-45 185.7 195 57.4
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 4.6e-45 185.3 194 59.3
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 6.0e-45 184.9 198 59.1
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 7.8e-45 184.5 192 58.9
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.0e-44 184.1 191 59.7
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 1.3e-44 183.7 196 58.7
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 2.3e-44 183.0 190 59.5
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 3.9e-44 182.2 194 58.8
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 5.1e-44 181.8 193 60.1
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 8.6e-44 181.0 198 57.6
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 8.6e-44 181.0 198 57.6
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 8.6e-44 181.0 198 57.6
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 8.6e-44 181.0 195 57.9
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 8.6e-44 181.0 196 57.1
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 1.5e-43 180.3 189 60.3
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 5.6e-43 178.3 197 57.4
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.2e-42 177.2 199 56.8
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.2e-42 177.2 199 56.8
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.6e-42 176.8 195 56.4
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.6e-42 176.8 191 57.1
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 2.8e-42 176.0 188 56.9
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 2.8e-42 176.0 200 54.5
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 2.8e-42 176.0 196 56.1
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.6e-42 175.6 196 55.1
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 4.7e-42 175.3 192 56.8
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 6.2e-42 174.9 192 57.3
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 8.1e-42 174.5 195 56.4
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 5.2e-41 171.8 196 54.6
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 3.4e-40 169.1 200 54.0
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 3.4e-40 169.1 193 56.0
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.4e-40 169.1 199 54.3
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 3.4e-40 169.1 190 55.8
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 5.8e-40 168.3 195 53.3
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.7e-39 166.8 193 54.9
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 2.2e-39 166.4 168 59.5
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 2.9e-39 166.0 193 55.4
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 2.9e-39 166.0 198 54.5
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 2.9e-39 166.0 196 54.6
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 4.9e-39 165.2 193 56.0
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.1e-38 164.1 188 58.5
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.9e-38 163.3 192 55.2
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.9e-38 163.3 192 55.2
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 3.2e-38 162.5 194 54.6
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 4.1e-38 162.2 191 53.9
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 5.4e-38 161.8 194 55.2
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 5.4e-38 161.8 195 53.3
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 5.4e-38 161.8 204 53.9
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 3.5e-37 159.1 197 52.3
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.9e-36 155.6 135 68.1
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 8.6e-36 154.5 193 53.4
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.1e-35 154.1 197 54.3
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.1e-35 154.1 141 63.1
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-35 154.1 168 56.0
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.1e-35 154.1 185 54.1
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.9e-35 153.3 191 55.5
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.3e-35 152.5 197 54.3
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 3.3e-35 152.5 168 56.0
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 9.6e-35 151.0 197 54.3
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.1e-34 149.8 135 66.7
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 2.8e-34 149.4 187 52.4
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 4.7e-34 148.7 195 49.7
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.1e-30 137.5 122 60.7
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.1e-30 137.5 157 57.3
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.9e-30 136.7 115 61.7
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 7.1e-30 134.8 193 48.2
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 1.7e-28 130.2 159 51.6
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.5e-27 127.1 123 57.7
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 9.6e-27 124.4 136 55.1
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 8.1e-26 121.3 140 53.6
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.4e-25 120.6 155 51.6
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 1.8e-25 120.2 155 50.3
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 7.6e-24 114.8 202 48.0
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-21 107.5 118 52.5
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 9.6e-19 97.8 101 59.4
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 1.1e-17 94.4 187 40.1
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 9.9e-16 87.8 119 49.6
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 1.7e-15 87.0 107 50.5
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 2.9e-15 86.3 105 52.4
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 5.5e-14 82.0 148 42.6
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.7e-13 79.7 89 53.9
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 1.9e-11 73.6 134 41.0
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 6.2e-10 68.6 61 72.1
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 4.0e-09 65.9 188 37.2
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.2e-08 64.3 69 56.5
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 3.4e-08 62.8 67 59.7
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 1.1e-06 57.8 61 57.4


User provided reference genes

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