Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 0.0e+00 1320.8 722 100.0
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 3.0e-267 925.2 730 71.5
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 4.8e-265 917.9 729 71.6
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 3.1e-264 915.2 733 70.1
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.2e-263 913.3 733 71.4
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 4.5e-263 911.4 733 70.3
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 4.3e-258 894.8 728 70.3
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 3.7e-257 891.7 734 68.9
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 3.1e-256 888.6 725 70.6
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 1.2e-252 876.7 816 63.5
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 1.8e-251 872.8 731 68.5
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 3.9e-251 871.7 729 68.4
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 1.5e-250 869.8 724 68.2
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 9.1e-248 860.5 731 66.9
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 7.7e-247 857.4 731 67.4
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 5.0e-246 854.7 703 68.6
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 6.5e-246 854.4 731 67.0
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 1.9e-245 852.8 731 67.3
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 1.2e-244 850.1 732 66.5
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 1.6e-244 849.7 729 67.1
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 1.8e-243 846.3 725 66.9
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 3.9e-243 845.1 728 66.1
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 7.4e-242 840.9 728 65.9
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 7.4e-242 840.9 735 65.7
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 8.2e-241 837.4 735 65.4
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 9.1e-240 833.9 731 66.8
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 1.5e-239 833.2 731 66.6
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 1.5e-239 833.2 697 67.0
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 7.7e-239 830.9 753 64.1
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 1.7e-238 829.7 725 65.7
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 8.5e-238 827.4 735 65.4
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 1.6e-236 823.2 731 65.7
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.8e-235 819.7 733 66.0
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 1.5e-234 816.6 728 64.4
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 2.0e-234 816.2 678 69.2
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 9.7e-234 813.9 726 65.3
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 1.7e-233 813.1 725 65.5
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 4.8e-233 811.6 705 66.4
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 3.1e-232 808.9 723 64.6
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 2.6e-231 805.8 752 64.2
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 2.6e-231 805.8 733 62.6
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 4.5e-231 805.1 731 64.6
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 1.3e-230 803.5 722 63.3
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 6.5e-230 801.2 733 64.4
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 2.5e-229 799.3 726 63.8
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 3.2e-229 798.9 728 62.1
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 1.2e-228 797.0 695 65.5
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 6.1e-228 794.7 729 61.5
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 6.7e-227 791.2 733 61.3
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 3.3e-226 788.9 731 61.4
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 1.1e-224 783.9 731 63.2
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 2.4e-224 782.7 739 61.8
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 3.1e-224 782.3 727 62.6
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 7.0e-224 781.2 729 63.0
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.2e-223 780.4 734 61.2
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 4.5e-223 778.5 737 62.3
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 2.2e-222 776.2 727 60.9
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 3.2e-221 772.3 718 62.5
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 9.4e-221 770.8 730 61.0
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 3.6e-220 768.8 730 59.7
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 8.0e-220 767.7 724 61.6
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 1.4e-219 766.9 694 63.7
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 5.2e-219 765.0 729 60.6
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 5.7e-218 761.5 740 60.5
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 3.7e-217 758.8 800 59.2
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 8.3e-217 757.7 731 61.6
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 7.0e-216 754.6 729 60.1
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 8.6e-214 747.7 703 61.9
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 3.3e-213 745.7 814 56.6
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 3.0e-211 739.2 727 59.1
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.2e-210 737.3 732 61.7
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 2.6e-210 736.1 748 58.2
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 8.3e-209 731.1 729 59.0
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 8.3e-209 731.1 729 59.0
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 4.5e-207 725.3 731 59.9
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 6.6e-206 721.5 725 58.3
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 6.6e-206 721.5 695 60.7
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 1.1e-205 720.7 726 60.1
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.3e-203 713.0 666 64.1
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 2.6e-202 709.5 723 59.5
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 4.1e-200 702.2 726 58.4
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.5e-197 693.7 748 55.9
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 2.1e-196 689.9 702 57.8
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 4.1e-192 675.6 679 59.4
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 5.2e-187 658.7 728 55.1
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 1.3e-182 644.0 774 52.3
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 3.9e-182 642.5 731 53.9
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 3.2e-168 596.3 673 54.2
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 1.1e-165 587.8 735 49.3
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 1.3e-161 574.3 600 58.0
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 2.7e-159 566.6 724 48.3
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 5.5e-152 542.3 580 57.2
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.9e-136 490.7 556 56.5
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 1.8e-134 484.2 359 72.4
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 3.7e-132 476.5 586 52.9
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 2.0e-130 470.7 432 65.0
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 1.6e-127 461.1 363 70.2
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 7.7e-122 442.2 425 62.6
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 2.6e-117 427.2 298 76.2
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 1.6e-103 381.3 272 74.6
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 1.8e-99 367.9 377 59.4
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 5.6e-88 329.7 705 34.9
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 3.9e-81 307.0 508 46.1
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 4.3e-80 303.5 450 46.7
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 8.9e-78 295.8 674 31.3
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 3.2e-75 287.3 380 50.8
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.7e-73 281.6 344 52.3
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 3.6e-71 273.9 669 31.5
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 1.3e-68 265.4 714 30.7
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 1.4e-67 261.9 680 36.2
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 7.8e-66 256.1 271 56.1
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 3.6e-63 247.3 717 30.4
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.3e-39 169.1 136 70.6
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.8e-25 122.1 84 67.9
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 2.2e-23 115.2 502 24.5
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.4e-22 111.7 144 49.3
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 4.1e-22 110.9 168 49.4
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.1e-19 102.8 124 46.0
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 1.2e-18 99.4 104 54.8
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 1.0e-17 96.3 95 56.8
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 7.4e-16 90.1 100 53.0
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 1.4e-14 85.9 70 62.9
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.4e-14 85.9 55 80.0
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 1.5e-13 82.4 105 49.5
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 1.0e-12 79.7 68 60.3
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 2.2e-12 78.6 118 34.7
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.2e-11 74.3 154 36.4
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 2.7e-10 71.6 272 27.9
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 4.7e-10 70.9 94 45.7
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 2.3e-09 68.6 55 60.0
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 9.7e-08 63.2 41 78.0
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 4.1e-06 57.8 41 65.9


User provided reference genes

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