Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 6.0e-92 340.9 181 100.0
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 4.3e-37 158.7 167 55.1
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 7.3e-37 157.9 171 53.2
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 2.8e-36 156.0 134 62.7
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 4.7e-36 155.2 170 54.7
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.8e-35 153.3 218 45.0
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 3.1e-35 152.5 225 45.8
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 8.9e-35 151.0 175 52.0
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.6e-34 149.4 168 52.4
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.7e-33 146.7 177 50.8
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 2.2e-33 146.4 167 52.7
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.9e-33 146.0 236 42.4
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 2.9e-33 146.0 230 44.3
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 3.7e-33 145.6 167 53.3
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.4e-33 144.8 223 43.9
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.4e-33 144.8 177 50.3
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 8.3e-33 144.4 218 45.4
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 8.3e-33 144.4 169 50.9
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 1.1e-32 144.1 169 50.3
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.1e-32 144.1 169 51.5
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 1.4e-32 143.7 173 48.6
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.9e-32 143.3 225 43.6
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 2.4e-32 142.9 171 48.5
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.2e-32 142.5 176 51.1
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 4.1e-32 142.1 169 51.5
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 5.4e-32 141.7 247 40.5
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 9.2e-32 141.0 155 52.3
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 2.0e-31 139.8 158 53.8
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 3.5e-31 139.0 166 48.2
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 6.0e-31 138.3 169 48.5
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.0e-30 137.5 171 46.8
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.3e-30 137.1 170 50.6
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.7e-30 136.7 171 48.5
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.0e-30 136.0 169 49.1
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 3.0e-30 136.0 166 49.4
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 3.9e-30 135.6 170 50.0
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 3.9e-30 135.6 165 49.1
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 3.9e-30 135.6 213 41.8
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 6.6e-30 134.8 170 48.8
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 6.6e-30 134.8 171 47.4
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 6.6e-30 134.8 170 48.2
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.5e-29 132.9 169 47.9
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.5e-29 132.9 169 47.9
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 3.3e-29 132.5 164 47.6
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 5.6e-29 131.7 217 41.9
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 5.6e-29 131.7 167 46.7
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 7.3e-29 131.3 165 47.9
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 7.3e-29 131.3 166 47.6
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 7.3e-29 131.3 166 47.6
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 9.5e-29 131.0 224 42.4
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 9.5e-29 131.0 170 48.2
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 9.5e-29 131.0 215 41.9
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 9.5e-29 131.0 150 51.3
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 1.2e-28 130.6 169 48.5
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.2e-28 130.6 221 41.2
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.2e-28 130.6 177 46.9
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.6e-28 130.2 166 47.6
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 2.1e-28 129.8 160 48.8
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 2.1e-28 129.8 176 47.2
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.8e-28 129.4 170 46.5
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 2.8e-28 129.4 169 47.3
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 2.8e-28 129.4 173 44.5
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.8e-28 129.4 244 38.5
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.7e-28 128.6 169 46.7
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 4.7e-28 128.6 218 40.4
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 6.2e-28 128.3 154 49.4
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 8.0e-28 127.9 165 47.3
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.1e-27 127.5 174 47.1
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 1.4e-27 127.1 147 49.7
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 2.3e-27 126.3 164 48.2
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 3.1e-27 125.9 169 44.4
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 4.0e-27 125.6 174 46.0
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 4.0e-27 125.6 165 45.5
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 6.8e-27 124.8 117 59.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 6.8e-27 124.8 167 44.3
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 1.2e-26 124.0 159 47.2
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 4.4e-26 122.1 179 43.0
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 7.5e-26 121.3 129 53.5
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 7.5e-26 121.3 150 50.0
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 1.3e-25 120.6 220 39.1
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.7e-25 120.2 172 46.5
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 2.9e-25 119.4 154 47.4
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 6.4e-25 118.2 167 45.5
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.4e-24 117.1 168 45.2
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 4.1e-24 115.5 111 55.0
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 4.1e-24 115.5 152 46.7
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 4.1e-24 115.5 172 44.8
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 5.4e-24 115.2 171 46.2
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 7.0e-24 114.8 166 44.0
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 9.2e-24 114.4 164 42.7
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 7.8e-23 111.3 152 48.0
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.3e-22 110.5 165 42.4
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 3.9e-22 109.0 167 44.9
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 3.9e-22 109.0 170 41.8
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 3.9e-22 109.0 92 66.3
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 8.6e-22 107.8 163 43.6
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 8.6e-22 107.8 162 43.8
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.9e-21 106.7 213 39.9
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.9e-21 106.7 158 44.3
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 1.9e-21 106.7 163 42.9
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 7.3e-21 104.8 168 41.1
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.6e-20 103.6 166 40.4
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 2.8e-20 102.8 94 62.8
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 4.7e-20 102.1 209 37.8
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 4.7e-20 102.1 209 38.3
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 4.7e-20 102.1 209 38.3
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 8.1e-20 101.3 220 37.7
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 1.1e-19 100.9 209 37.3
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 1.1e-19 100.9 209 37.8
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 1.1e-19 100.9 144 45.1
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 1.8e-19 100.1 209 37.8
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 4.0e-19 99.0 152 42.1
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 8.9e-19 97.8 162 40.1
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 1.2e-18 97.4 163 39.9
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.5e-18 97.1 95 55.8
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.5e-18 97.1 192 38.0
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 4.4e-18 95.5 99 57.6
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.3e-17 94.0 141 45.4
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.7e-17 93.6 142 44.4
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 1.7e-17 93.6 81 64.2
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 4.9e-17 92.0 77 66.2
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 4.9e-17 92.0 167 38.3
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 6.4e-17 91.7 95 58.9
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 8.3e-17 91.3 143 42.7
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 2.1e-15 86.7 103 46.6
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 2.1e-15 86.7 99 53.5
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 4.6e-15 85.5 102 51.0
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 7.8e-15 84.7 76 60.5
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 1.7e-14 83.6 147 38.8
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 1.7e-14 83.6 100 50.0
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.0e-14 82.8 105 44.8
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 5.1e-14 82.0 172 36.6
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 7.3e-13 78.2 136 38.2
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.6e-12 77.0 75 61.3
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 2.8e-12 76.3 95 51.6
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.0e-10 70.1 50 64.0
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 3.4e-10 69.3 66 56.1
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 7.6e-10 68.2 199 32.7
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 1.7e-09 67.0 177 29.9
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 4.9e-09 65.5 81 51.9
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 7.1e-08 61.6 38 73.7
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 3.5e-07 59.3 158 30.4
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 3.0e-06 56.2 59 59.3


User provided reference genes

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