Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 0.0e+00 1349.7 683 100.0
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.4e-250 869.8 678 66.5
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.3e-227 793.5 680 60.1
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 5.1e-224 781.6 682 60.6
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.1e-223 780.4 682 60.6
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.9e-223 779.6 683 60.0
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 5.8e-220 768.1 683 59.9
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 6.4e-219 764.6 680 58.5
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 9.2e-218 760.8 639 61.0
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 3.5e-217 758.8 678 59.9
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 1.0e-216 757.3 685 59.0
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.7e-216 756.5 681 59.2
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.9e-215 753.1 680 58.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 9.6e-215 750.7 681 58.9
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 8.9e-213 744.2 668 59.0
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 2.4e-210 736.1 673 59.7
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.6e-209 733.4 666 59.2
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 3.0e-208 729.2 676 59.2
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 1.5e-207 726.9 730 55.6
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.4e-205 720.3 690 55.5
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 6.9e-205 718.0 686 57.1
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 1.5e-204 716.8 693 55.6
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 9.9e-204 714.1 780 52.1
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.9e-202 709.9 678 56.6
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.1e-202 708.0 650 57.8
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 9.3e-202 707.6 650 57.8
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 3.5e-201 705.7 666 55.9
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 4.6e-201 705.3 724 54.3
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 4.6e-201 705.3 690 55.2
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 3.9e-200 702.2 653 57.3
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 8.7e-200 701.0 684 55.3
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 1.9e-199 699.9 620 60.3
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.9e-199 699.9 661 56.9
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.9e-199 699.9 690 57.0
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 7.4e-199 698.0 683 55.5
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 2.8e-198 696.0 689 54.7
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 8.1e-198 694.5 655 56.3
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 1.1e-197 694.1 677 54.9
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.8e-197 693.3 728 54.0
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.4e-197 693.0 649 57.6
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 4.0e-197 692.2 690 54.5
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 5.3e-197 691.8 702 54.4
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 1.2e-196 690.6 666 55.0
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 2.6e-196 689.5 683 54.8
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 5.8e-196 688.3 738 53.1
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 7.6e-196 688.0 721 53.5
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 9.9e-196 687.6 738 53.1
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.3e-195 687.2 721 53.5
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 1.7e-195 686.8 688 54.8
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 2.9e-195 686.0 662 55.7
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 4.9e-195 685.3 705 53.9
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.9e-195 685.3 649 56.2
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 8.4e-195 684.5 661 54.2
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 7.1e-194 681.4 737 52.4
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.2e-193 680.6 650 56.6
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 3.5e-193 679.1 669 54.4
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 1.3e-192 677.2 604 58.8
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 3.0e-192 676.0 702 53.0
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 3.0e-192 676.0 676 53.3
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 3.9e-192 675.6 650 56.3
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 6.7e-192 674.9 617 57.2
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 2.5e-191 672.9 691 53.5
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 2.5e-191 672.9 653 55.3
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 7.4e-191 671.4 664 54.5
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 7.4e-191 671.4 694 54.0
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 8.2e-190 667.9 691 54.1
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.2e-188 664.1 643 55.1
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 4.5e-188 662.1 676 52.4
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 3.8e-187 659.1 690 51.9
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 3.8e-187 659.1 660 54.7
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.9e-186 656.8 647 54.4
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.9e-186 656.8 663 53.5
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 5.5e-186 655.2 640 54.7
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 7.1e-186 654.8 686 53.8
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 6.0e-185 651.7 681 52.6
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 3.0e-184 649.4 702 52.1
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 5.1e-184 648.7 641 55.1
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 6.7e-184 648.3 669 52.9
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 8.7e-184 647.9 669 52.9
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 1.1e-183 647.5 669 53.1
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.5e-183 647.1 694 52.6
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.5e-183 646.4 696 51.9
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 1.3e-182 644.0 703 51.9
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 3.7e-182 642.5 658 53.5
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 4.8e-182 642.1 695 50.9
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.1e-181 639.0 662 53.2
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.6e-180 636.3 666 53.3
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.5e-180 635.6 604 55.8
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.0e-179 634.4 681 52.3
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 2.9e-179 632.9 624 53.7
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 3.8e-179 632.5 688 51.7
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 3.8e-179 632.5 708 51.4
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 5.5e-178 628.6 611 56.1
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 3.6e-177 625.9 689 51.1
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 4.6e-177 625.5 637 53.7
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 7.9e-177 624.8 553 60.2
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.0e-176 624.4 636 53.0
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 2.3e-176 623.2 649 52.1
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.9e-176 622.5 682 51.8
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.9e-176 622.5 671 53.1
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 5.1e-176 622.1 692 51.7
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 6.7e-176 621.7 692 51.7
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 3.3e-175 619.4 653 52.5
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.3e-174 617.5 636 53.6
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 4.1e-173 612.5 670 51.3
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.0e-171 607.8 687 50.9
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 2.2e-171 606.7 695 52.7
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 1.2e-169 600.9 663 50.2
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 6.1e-169 598.6 644 50.8
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 7.9e-169 598.2 666 50.5
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 8.8e-168 594.7 653 52.4
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 2.0e-167 593.6 641 50.4
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 7.4e-167 591.7 636 52.7
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 7.4e-167 591.7 577 56.0
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.4e-165 586.6 687 49.5
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 4.1e-165 585.9 586 54.4
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 5.9e-164 582.0 651 49.3
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 1.2e-161 574.3 668 48.8
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.5e-159 567.4 624 48.1
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 2.8e-158 563.1 683 47.4
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 1.4e-157 560.8 594 53.9
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 5.0e-155 552.4 639 47.1
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 5.0e-155 552.4 622 47.7
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 1.6e-153 547.4 657 49.2
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 6.3e-150 535.4 694 46.7
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 2.4e-149 533.5 648 47.4
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 2.0e-148 530.4 682 48.1
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.7e-147 527.3 503 53.5
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 5.5e-146 522.3 515 55.1
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 2.3e-144 516.9 464 59.1
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 3.1e-141 506.5 704 45.0
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 3.6e-137 493.0 669 46.2
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.2e-132 478.0 497 53.5
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 1.2e-127 461.5 480 51.7
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 3.2e-125 453.4 727 41.1
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 3.7e-118 429.9 428 54.2
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 7.8e-116 422.2 644 40.4
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.7e-115 421.0 651 41.2
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 8.1e-113 412.1 649 40.2
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.2e-112 409.5 664 39.2
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 4.6e-108 396.4 638 39.3
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 6.0e-108 396.0 675 37.8
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 7.8e-108 395.6 389 54.5
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.2e-103 381.7 724 37.0
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.4e-101 374.8 745 37.0
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.4e-101 374.8 649 39.9
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 2.5e-98 364.0 796 32.9
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.4e-96 358.2 621 37.7
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 3.4e-95 353.6 658 37.2
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 3.5e-92 343.6 546 39.7
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 8.4e-86 322.4 476 41.2
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 6.0e-84 316.2 554 38.1
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 8.7e-83 312.4 735 31.7
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 2.1e-81 307.8 339 47.2
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.8e-78 297.0 511 37.6
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 6.7e-75 286.2 498 36.1
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.1e-74 285.4 296 53.0
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.3e-74 283.5 213 67.1
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 8.2e-73 279.3 208 67.3
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.8e-56 224.9 330 37.6
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.2e-30 138.3 270 35.6
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.6e-28 132.1 108 60.2
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.7e-22 112.1 117 53.0
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 3.8e-22 110.9 184 40.2
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.9e-19 99.8 109 52.3
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.0e-18 98.6 66 72.7
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 2.4e-16 91.7 63 73.0
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 5.6e-13 80.5 131 39.7
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 1.0e-11 76.3 121 38.8
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 1.3e-09 69.3 52 65.4
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 6.4e-09 67.0 67 50.7
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 4.1e-08 64.3 54 53.7
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 1.3e-06 59.3 49 57.1
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 6.6e-06 57.0 81 40.7


User provided reference genes

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