Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 4.4e-167 591.3 308 100.0
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 3.6e-121 438.7 308 73.1
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 2.2e-118 429.5 307 73.6
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.9e-117 426.4 300 73.0
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 1.6e-113 413.3 307 70.7
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 3.6e-113 412.1 297 69.7
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 4.7e-113 411.8 300 70.3
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 5.8e-111 404.8 301 66.8
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 9.9e-111 404.1 302 70.5
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 2.2e-110 402.9 308 68.5
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 4.9e-110 401.7 302 69.9
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 4.9e-110 401.7 308 68.5
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 4.9e-110 401.7 308 68.5
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 5.4e-109 398.3 301 67.4
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 2.1e-108 396.4 303 68.0
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.0e-107 394.0 299 67.6
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.0e-107 394.0 299 67.6
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.3e-107 393.7 295 69.2
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.3e-107 393.7 293 69.3
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 2.3e-107 392.9 304 67.1
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 3.9e-107 392.1 299 65.9
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 6.6e-107 391.3 299 64.5
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 8.7e-107 391.0 299 67.6
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 1.1e-106 390.6 303 65.7
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.1e-106 390.6 302 68.2
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.1e-106 390.6 302 66.6
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.1e-106 390.6 304 66.4
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.9e-106 389.8 299 67.6
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.5e-106 389.4 299 67.2
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.5e-106 389.4 302 65.2
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 4.3e-106 388.7 295 68.5
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 5.6e-106 388.3 307 65.5
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 2.1e-105 386.3 304 64.5
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 3.6e-105 385.6 302 67.5
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 4.8e-105 385.2 304 63.8
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 1.4e-104 383.6 301 67.1
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 3.1e-104 382.5 301 64.8
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 6.9e-104 381.3 302 64.6
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 1.5e-103 380.2 301 66.4
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 1.5e-103 380.2 303 67.0
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 2.6e-103 379.4 303 66.3
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 1.7e-102 376.7 299 64.5
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 6.4e-102 374.8 298 65.1
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.9e-101 373.2 297 63.6
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 3.2e-101 372.5 299 62.2
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 7.1e-101 371.3 302 65.6
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 2.7e-100 369.4 301 63.5
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 3.5e-100 369.0 308 60.1
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 3.5e-100 369.0 307 61.2
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 4.6e-100 368.6 314 62.4
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 6.0e-100 368.2 299 63.9
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.3e-99 367.1 308 63.0
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 2.3e-99 366.3 302 64.9
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 3.9e-99 365.5 304 59.5
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 6.7e-99 364.8 299 64.2
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 6.7e-99 364.8 299 64.2
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 8.7e-99 364.4 302 64.2
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 1.5e-98 363.6 306 62.1
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.9e-98 363.2 299 64.2
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 1.9e-98 363.2 297 65.0
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 1.9e-98 363.2 302 63.6
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 3.3e-98 362.5 308 63.6
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 4.3e-98 362.1 315 62.9
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 4.3e-98 362.1 315 62.9
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 5.6e-98 361.7 305 62.6
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 7.4e-98 361.3 304 63.5
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 8.1e-97 357.8 296 64.5
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 8.1e-97 357.8 303 65.0
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 2.4e-96 356.3 318 60.4
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 4.0e-96 355.5 306 63.1
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 5.3e-96 355.1 303 62.0
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 2.0e-95 353.2 302 62.6
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 2.6e-95 352.8 308 62.3
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 5.8e-95 351.7 266 65.0
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 9.9e-95 350.9 313 60.4
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.3e-94 350.5 303 60.7
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.7e-94 350.1 305 62.3
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-93 347.4 296 63.9
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.9e-93 346.7 296 63.2
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 3.2e-93 345.9 300 62.0
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 9.3e-93 344.4 305 60.3
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 1.2e-92 344.0 304 61.5
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 2.1e-92 343.2 306 61.1
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 2.7e-92 342.8 301 61.5
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 3.5e-92 342.4 306 60.1
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 3.5e-92 342.4 312 59.9
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 6.0e-92 341.7 299 61.5
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.0e-91 340.9 300 59.7
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.8e-91 340.1 312 59.6
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 3.0e-91 339.3 312 59.6
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 3.9e-91 339.0 299 57.9
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 2.5e-90 336.3 308 60.1
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 3.3e-90 335.9 256 69.9
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 1.3e-89 334.0 271 62.0
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 1.3e-89 334.0 302 60.9
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 2.1e-89 333.2 306 60.5
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 2.4e-88 329.7 308 57.8
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 1.2e-87 327.4 309 59.5
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 5.8e-87 325.1 302 55.3
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 1.0e-86 324.3 218 70.2
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 6.5e-86 321.6 312 57.4
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 1.1e-85 320.9 281 63.0
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 3.2e-85 319.3 358 52.2
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 7.1e-85 318.2 300 54.7
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.6e-84 317.0 306 58.8
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.1e-84 316.6 309 53.4
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 2.7e-84 316.2 304 56.6
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 3.9e-83 312.4 254 65.0
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 6.7e-83 311.6 300 56.7
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 5.7e-82 308.5 267 62.9
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 5.7e-82 308.5 290 55.2
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 7.4e-82 308.1 300 57.3
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 7.4e-82 308.1 303 54.8
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 9.7e-82 307.8 301 53.2
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 3.1e-80 302.8 306 57.8
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 2.1e-76 290.0 229 69.0
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 4.3e-74 282.3 218 61.0
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 8.2e-73 278.1 321 48.9
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 2.2e-70 270.0 290 53.1
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 8.2e-65 251.5 297 50.8
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 1.5e-63 247.3 320 48.4
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 8.5e-62 241.5 234 56.0
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 8.0e-60 235.0 293 47.1
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 3.5e-55 219.5 180 61.7
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 1.3e-54 217.6 213 53.1
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 3.5e-47 193.0 201 46.8
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.4e-43 181.0 182 47.3
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 1.8e-43 180.6 289 42.2
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 1.7e-41 174.1 203 46.3
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 4.7e-36 156.0 147 58.5
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 1.2e-34 151.4 100 73.0
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.3e-29 133.3 133 55.6
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.3e-29 133.3 133 55.6
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 6.1e-28 129.0 193 34.7
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 4.9e-25 119.4 166 37.3
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 4.6e-23 112.8 200 35.5
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 1.5e-21 107.8 96 67.7
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-20 104.8 66 66.7
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 6.2e-20 102.4 67 68.7
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 1.8e-19 100.9 64 75.0
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 8.9e-19 98.6 62 75.8
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.6e-15 86.3 77 53.2
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 8.6e-14 82.0 119 47.1
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 4.3e-13 79.7 52 71.2
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 7.3e-13 79.0 119 46.2
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 6.8e-11 72.4 44 65.9
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.5e-10 71.2 44 65.9
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.9e-09 67.0 54 57.4
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 3.7e-09 66.6 43 67.4
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 1.4e-08 64.7 132 43.2
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 3.5e-07 60.1 38 68.4


User provided reference genes

Program Settings