Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 4.3e-270 934.1 485 100.0
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 3.5e-102 376.3 513 44.1
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 4.5e-102 375.9 515 44.5
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 3.8e-101 372.9 495 45.5
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.0e-98 364.8 532 42.9
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 3.4e-97 359.8 523 43.8
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 5.8e-97 359.0 525 42.7
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 8.3e-96 355.1 523 43.0
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.0e-93 348.2 509 41.1
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.9e-93 346.3 508 42.3
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 2.5e-92 343.6 539 41.6
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.2e-91 341.3 515 42.9
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.1e-90 336.7 511 41.1
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 9.8e-89 331.6 506 41.5
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 3.5e-86 323.2 510 39.2
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.0e-85 320.1 503 40.6
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 8.9e-82 308.5 458 43.0
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 1.2e-81 308.1 654 34.1
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.5e-81 307.8 513 39.4
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 2.6e-81 307.0 454 40.5
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.4e-81 306.6 646 36.1
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 9.9e-81 305.1 533 40.0
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 4.9e-80 302.8 641 34.8
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 6.0e-78 295.8 652 34.7
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 3.9e-77 293.1 511 41.1
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 5.1e-77 292.7 527 39.1
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 8.6e-77 292.0 639 33.2
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 5.6e-76 289.3 639 33.3
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 2.0e-73 280.8 509 39.3
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.3e-72 278.1 639 32.7
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.9e-71 274.2 639 31.9
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.2e-71 273.5 639 32.4
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.7e-69 267.7 518 38.6
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 7.3e-68 262.3 521 37.6
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.2e-67 261.5 433 39.7
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 1.1e-66 258.5 597 32.3
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 5.8e-65 252.7 514 36.0
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 3.5e-62 243.4 600 32.8
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 2.2e-56 224.2 386 40.2
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.1e-55 221.9 609 31.0
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 1.4e-55 221.5 385 39.2
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.9e-55 221.1 585 29.7
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.4e-55 220.7 584 29.5
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 4.2e-55 219.9 476 33.2
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.6e-54 218.0 586 28.3
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 1.0e-53 215.3 485 33.6
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.0e-53 215.3 633 28.0
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 1.0e-53 215.3 513 33.5
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 1.3e-53 214.9 542 33.0
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.3e-53 214.9 373 39.1
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.8e-53 214.5 387 35.4
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.8e-53 214.5 389 36.2
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 3.9e-53 213.4 392 39.8
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 3.9e-53 213.4 238 48.7
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 3.9e-53 213.4 391 36.8
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 5.1e-53 213.0 386 37.8
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 9.6e-52 208.8 308 41.6
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 9.6e-52 208.8 590 29.8
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 9.6e-52 208.8 697 28.4
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.3e-51 208.4 284 42.6
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 3.7e-51 206.8 503 35.0
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 6.2e-51 206.1 322 40.1
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 6.2e-51 206.1 374 38.8
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 8.1e-51 205.7 580 30.0
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.4e-50 204.9 503 35.0
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 3.1e-50 203.8 386 38.3
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 4.0e-50 203.4 571 31.0
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 5.3e-50 203.0 496 33.7
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 9.0e-50 202.2 390 34.9
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 1.2e-49 201.8 372 39.8
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 3.4e-49 200.3 676 27.5
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 9.9e-49 198.7 327 39.8
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 1.3e-48 198.4 356 39.3
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.2e-48 197.6 255 40.8
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 8.4e-48 195.7 389 36.5
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.9e-47 194.5 388 31.7
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.9e-45 186.8 304 35.9
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 4.3e-44 183.3 664 27.3
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.1e-42 178.7 694 27.8
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.4e-42 178.3 275 38.5
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.8e-42 177.9 420 33.1
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.8e-42 177.9 357 36.1
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 5.3e-42 176.4 613 28.5
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 6.9e-42 176.0 694 27.5
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.8e-40 170.2 234 41.9
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 1.1e-39 168.7 224 41.5
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 4.2e-39 166.8 238 41.2
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 7.1e-39 166.0 679 27.2
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 6.0e-38 162.9 679 27.1
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.0e-37 162.2 236 40.7
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.1e-37 159.8 468 32.5
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.1e-36 158.7 695 26.2
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 9.7e-36 155.6 226 39.8
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.3e-35 155.2 366 34.7
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 2.8e-35 154.1 700 25.9
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 2.8e-35 154.1 711 24.8
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.8e-35 154.1 489 31.7
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 3.7e-35 153.7 700 25.7
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 2.4e-34 151.0 709 25.7
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 4.1e-34 150.2 319 35.7
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 9.0e-34 149.1 249 37.8
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.5e-33 148.3 612 27.0
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.2e-30 138.7 723 24.2
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 4.6e-30 136.7 378 31.7
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 7.9e-30 136.0 720 23.5
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 1.8e-29 134.8 482 28.2
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 2.0e-28 131.3 287 34.5
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 7.4e-28 129.4 116 50.9
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.3e-27 128.6 423 29.1
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 4.8e-27 126.7 149 41.6
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.0e-25 121.3 412 29.6
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.0e-24 119.0 502 27.1
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.1e-23 115.5 380 26.8
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 5.5e-23 113.2 226 34.1
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 7.2e-23 112.8 291 32.3
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 7.9e-22 109.4 333 29.1
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 7.0e-18 96.3 107 44.9
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 7.0e-18 96.3 160 40.0
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.6e-14 85.1 528 23.1
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.7e-14 84.3 358 26.5
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.7e-14 84.3 358 26.5
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 8.0e-14 82.8 138 38.4
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.0e-13 82.4 138 38.4
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 1.8e-13 81.6 106 43.4
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.8e-13 81.6 281 29.9
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 9.7e-12 75.9 242 27.3
ATR0580G041 Amborella trichopoda HOM05D005385 ORTHO05D006768 1.1e-10 72.4 507 23.7
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 9.1e-10 69.3 94 38.3
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.8e-08 63.9 94 41.5
HPP92_018527 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.5e-07 62.0 95 36.8


User provided reference genes

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