Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.1e-133 479.9 243 100.0
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.2e-105 386.0 242 78.5
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 9.3e-96 354.0 245 75.1
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.7e-95 352.4 243 74.1
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.3e-94 350.1 247 74.1
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.7e-94 349.7 245 75.9
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 3.0e-94 349.0 247 75.3
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 3.9e-94 348.6 246 74.0
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 3.9e-94 348.6 247 73.7
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 3.9e-94 348.6 246 72.8
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 6.6e-94 347.8 241 77.2
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.1e-93 347.1 245 73.5
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-93 346.7 245 73.5
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.3e-93 345.5 245 73.1
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 4.3e-93 345.1 246 72.4
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 5.6e-93 344.7 244 75.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 5.6e-93 344.7 241 75.1
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 7.3e-93 344.4 241 74.3
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 9.6e-93 344.0 246 72.0
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 9.6e-93 344.0 241 74.3
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.6e-92 342.0 250 72.8
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.8e-92 341.7 248 72.6
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 4.8e-92 341.7 245 71.8
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.8e-92 341.7 245 72.7
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 8.1e-92 340.9 250 72.4
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.1e-91 340.5 252 72.6
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.1e-91 340.5 252 72.6
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.1e-91 340.5 248 72.6
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.1e-91 340.5 243 73.7
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.1e-91 340.5 254 72.0
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.4e-91 340.1 251 72.5
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.4e-91 340.1 243 73.7
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.4e-91 339.3 242 72.3
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 3.1e-91 339.0 250 72.0
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.1e-91 339.0 245 72.2
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.9e-91 337.8 252 71.8
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 6.9e-91 337.8 255 71.0
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 9.0e-91 337.4 250 72.8
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.5e-90 336.7 242 73.1
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.6e-90 335.9 254 69.7
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.5e-90 335.1 245 69.0
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.3e-89 333.6 251 69.3
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.7e-89 333.2 244 70.5
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.7e-89 333.2 242 72.3
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.2e-89 332.8 245 68.6
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 3.8e-89 332.0 254 68.1
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 3.8e-89 332.0 245 71.8
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 8.4e-89 330.9 262 66.8
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 8.4e-89 330.9 252 71.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 8.4e-89 330.9 246 70.7
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.9e-88 329.7 247 70.0
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 2.4e-88 329.3 250 70.0
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 2.4e-88 329.3 242 70.7
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.4e-88 329.3 245 68.2
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.4e-88 329.3 252 72.2
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 2.4e-88 329.3 244 70.5
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 4.2e-88 328.6 257 67.7
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.2e-88 328.6 252 71.4
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.2e-87 327.0 248 70.2
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.5e-87 325.5 245 70.2
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.5e-87 325.5 245 70.2
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 4.6e-87 325.1 245 70.6
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.6e-87 325.1 243 68.7
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.0e-86 323.9 255 68.2
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.0e-86 323.9 245 70.6
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.0e-86 323.9 245 70.6
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.0e-86 323.9 245 70.6
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.3e-86 323.6 245 70.6
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.8e-86 323.2 250 69.6
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 3.0e-86 322.4 245 68.6
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.1e-86 321.6 245 70.2
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.1e-86 321.6 244 70.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 6.7e-86 321.2 245 70.6
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.1e-85 320.5 252 69.8
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.9e-85 319.7 240 72.1
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 5.6e-85 318.2 219 73.5
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 5.6e-85 318.2 244 68.0
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.1e-84 316.2 241 67.2
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 8.1e-84 314.3 248 65.7
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-83 313.5 235 70.6
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 2.4e-83 312.8 237 71.7
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 3.1e-83 312.4 248 69.0
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 9.0e-83 310.8 245 65.3
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.2e-82 310.5 235 70.2
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.5e-82 310.1 255 69.0
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 2.6e-82 309.3 245 67.3
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.6e-82 309.3 249 65.1
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.4e-82 308.9 243 66.3
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 4.5e-82 308.5 315 57.5
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 5.8e-82 308.1 245 68.2
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 7.6e-82 307.8 253 67.2
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.7e-81 306.6 249 63.9
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.7e-81 306.6 248 64.5
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.9e-81 305.8 247 64.4
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.8e-81 305.4 247 64.4
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 3.8e-81 305.4 229 70.3
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 3.8e-81 305.4 254 67.3
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 4.9e-81 305.1 246 68.7
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 6.4e-81 304.7 247 64.0
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.4e-81 304.3 247 64.4
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 8.4e-81 304.3 253 63.6
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.1e-80 303.9 261 65.1
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.4e-80 303.5 247 64.0
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.4e-80 303.5 239 69.9
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.4e-80 303.5 249 63.1
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.9e-80 303.1 246 63.4
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 5.5e-80 301.6 247 64.0
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 5.5e-80 301.6 258 64.3
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 9.3e-80 300.8 245 63.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.6e-79 300.1 254 62.6
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.6e-79 300.1 232 69.4
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 3.5e-79 298.9 231 71.9
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 7.9e-79 297.7 255 62.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 7.9e-79 297.7 258 64.3
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.3e-78 297.0 246 64.6
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.9e-78 295.4 205 73.7
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 6.7e-78 294.7 249 63.5
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 8.7e-78 294.3 239 67.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.5e-77 293.5 248 62.5
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.5e-77 292.7 252 62.3
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 5.6e-77 291.6 240 64.6
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.6e-77 291.6 230 69.1
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 7.4e-77 291.2 215 71.2
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.6e-76 290.0 231 66.2
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 8.2e-76 287.7 323 52.3
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 2.4e-75 286.2 259 59.8
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.2e-74 283.9 250 61.6
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.2e-74 283.9 250 61.6
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.2e-74 283.9 250 61.6
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 4.5e-74 282.0 245 61.6
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.0e-73 280.8 250 61.2
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 7.9e-71 271.2 243 61.3
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 4.1e-67 258.8 319 48.6
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.4e-66 255.8 228 59.6
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 4.5e-66 255.4 243 59.3
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.1e-64 250.8 230 60.9
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 7.9e-63 244.6 239 56.1
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.4e-62 243.8 144 79.9
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 5.1e-62 241.9 236 58.1
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.5e-61 240.4 249 54.2
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.7e-60 235.7 146 78.1
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.5e-58 230.3 239 55.2
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 3.4e-58 229.2 136 80.1
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.8e-54 216.9 155 69.7
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-53 213.8 155 69.7
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.3e-52 210.7 212 55.2
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.5e-48 196.4 267 46.4
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.6e-47 193.7 189 58.7
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 7.4e-45 184.9 113 76.1
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 1.8e-43 180.3 286 41.3
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 4.5e-42 175.6 117 72.6
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 2.0e-34 150.2 267 37.5
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 2.9e-33 146.4 265 38.1
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 8.8e-30 134.8 126 63.5
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.1e-27 126.3 130 61.5
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 5.0e-25 119.0 69 81.2
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.1e-23 113.6 87 59.8
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 6.1e-23 112.1 98 65.3
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 8.9e-22 108.2 95 54.7
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 5.4e-19 99.0 75 72.0
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.7e-18 96.7 93 60.2
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 2.3e-17 93.6 75 68.0
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 5.0e-17 92.4 128 42.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 9.5e-16 88.2 110 37.3
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.8e-14 84.0 121 47.9
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 3.7e-12 76.3 129 45.0
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 6.4e-12 75.5 77 54.5
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 7.8e-10 68.6 81 48.1
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.3e-08 62.0 93 46.2
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 8.0e-07 58.5 148 29.1


User provided reference genes

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