Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 2.0e-155 552.4 273 100.0
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.8e-90 335.5 259 64.5
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 2.5e-89 332.8 275 60.7
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.6e-88 330.1 264 62.1
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 2.1e-88 329.7 277 61.0
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 8.0e-88 327.8 258 61.6
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 3.0e-87 325.9 265 61.5
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 5.2e-87 325.1 270 62.2
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 6.8e-87 324.7 266 60.9
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 2.0e-86 323.2 265 61.1
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 1.3e-85 320.5 262 60.3
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 2.8e-85 319.3 268 58.2
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 3.7e-85 318.9 255 60.4
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 4.8e-85 318.5 256 61.3
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 8.3e-85 317.8 261 60.5
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.1e-84 317.4 262 59.5
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.4e-84 317.0 268 57.8
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 1.4e-84 317.0 268 58.2
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 1.6e-83 313.5 266 59.4
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 2.0e-83 313.2 251 61.8
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.7e-83 312.8 272 57.7
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 2.7e-83 312.8 285 57.2
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 3.5e-83 312.4 272 57.0
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 3.5e-83 312.4 272 57.0
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 5.9e-83 311.6 257 61.1
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.3e-82 310.5 258 59.3
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 1.3e-82 310.5 257 59.1
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 2.3e-82 309.7 271 57.2
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 2.3e-82 309.7 270 56.3
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 5.0e-82 308.5 254 58.3
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 8.6e-82 307.8 280 57.1
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 1.9e-81 306.6 269 57.6
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 3.3e-81 305.8 269 56.9
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 3.3e-81 305.8 270 55.9
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.2e-80 303.9 270 57.8
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 1.6e-80 303.5 270 57.4
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 1.6e-80 303.5 270 56.3
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 2.8e-80 302.8 271 55.0
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 4.7e-80 302.0 254 57.1
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.4e-79 300.4 285 53.7
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 1.8e-79 300.1 252 59.1
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 2.3e-79 299.7 255 56.9
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 1.2e-78 297.4 269 56.5
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 1.5e-78 297.0 262 57.3
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 2.6e-78 296.2 295 52.5
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 4.4e-78 295.4 270 55.9
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 5.7e-78 295.0 265 57.0
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 1.7e-77 293.5 280 55.4
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 1.7e-77 293.5 256 59.4
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 2.2e-77 293.1 250 57.2
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 2.2e-77 293.1 249 58.6
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 2.8e-77 292.7 259 57.5
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 6.3e-77 291.6 242 60.3
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 1.8e-76 290.0 254 56.3
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.1e-76 288.9 282 55.3
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.0e-76 288.1 282 55.3
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 1.2e-75 287.3 269 53.9
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 1.6e-75 287.0 279 53.0
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.6e-75 287.0 242 58.3
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.6e-75 287.0 295 51.9
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 2.7e-75 286.2 258 55.8
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.6e-72 276.9 262 54.2
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 1.0e-71 274.2 268 53.0
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 1.4e-71 273.9 250 55.2
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.4e-71 273.9 274 52.9
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 4.0e-71 272.3 266 52.6
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.5e-70 270.4 265 54.7
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 1.5e-70 270.4 255 56.5
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.0e-70 270.0 277 50.5
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 2.6e-70 269.6 259 54.4
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 5.8e-70 268.5 270 55.9
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 2.9e-69 266.2 267 52.1
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 3.7e-69 265.8 243 54.7
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 3.0e-66 256.1 247 52.6
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.3e-65 252.7 202 63.4
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 4.3e-65 252.3 268 50.0
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 1.2e-64 250.8 279 51.3
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 2.3e-63 246.5 240 54.2
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 3.1e-63 246.1 263 48.3
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 1.7e-61 240.4 256 51.2
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 4.9e-61 238.8 252 48.8
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 4.1e-60 235.7 201 56.7
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 6.0e-59 231.9 403 35.5
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 8.6e-58 228.0 323 41.5
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.6e-58 228.0 216 56.9
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 1.5e-57 227.3 258 50.0
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 9.5e-57 224.6 216 53.7
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 8.1e-56 221.5 205 54.6
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 4.4e-54 215.7 246 46.7
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.9e-52 210.3 209 53.6
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.4e-52 208.8 281 45.6
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.4e-52 208.8 281 45.6
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 3.5e-51 206.1 177 57.6
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 3.0e-50 203.0 163 62.0
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 4.7e-48 195.7 260 43.5
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.4e-47 194.1 156 63.5
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 4.0e-47 192.6 159 60.4
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.8e-45 186.0 272 42.3
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 4.2e-44 182.6 251 42.2
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.6e-43 180.6 164 54.3
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 2.1e-43 180.3 201 50.7
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 7.8e-43 178.3 122 70.5
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 4.8e-40 169.1 219 41.6
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 9.0e-39 164.9 151 54.3
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 3.4e-38 162.9 117 65.8
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 4.9e-37 159.1 126 62.7
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.6e-35 154.1 153 51.6
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.6e-35 154.1 153 51.6
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 2.3e-34 150.2 153 51.0
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 2.3e-34 150.2 153 51.0
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.5e-33 147.5 136 54.4
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 1.5e-33 147.5 137 54.0
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 2.5e-33 146.7 148 50.0
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 2.2e-29 133.7 112 58.0
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 2.4e-28 130.2 299 32.4
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 4.6e-27 125.9 260 32.3
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 1.1e-25 121.3 96 63.5
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.5e-25 120.9 134 47.0
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 1.4e-23 114.4 98 56.1
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 4.0e-23 112.8 101 53.5
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 5.3e-23 112.5 104 52.9
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 6.9e-23 112.1 319 27.6
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 9.0e-23 111.7 71 69.0
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 3.4e-22 109.8 113 47.8
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 3.2e-20 103.2 167 39.5
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.3e-18 97.8 107 47.7
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 2.3e-18 97.1 96 52.1
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.8e-16 90.1 78 48.7
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 2.6e-14 83.6 61 63.9
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 4.5e-14 82.8 65 61.5
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 8.4e-13 78.6 73 47.9
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 1.2e-06 58.2 58 50.0


User provided reference genes

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