Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 2.4e-190 668.7 337 100.0
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 5.1e-177 624.4 332 92.5
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.5e-176 622.9 332 92.2
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.9e-176 622.5 332 92.2
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 5.6e-176 620.9 332 91.6
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 9.6e-176 620.2 330 92.7
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.6e-175 619.4 338 90.2
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 2.1e-175 619.0 339 90.6
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 3.7e-175 618.2 332 91.3
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 3.7e-175 618.2 338 90.5
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 4.8e-175 617.8 338 90.8
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 4.8e-175 617.8 335 90.7
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 8.1e-175 617.1 333 91.3
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 1.1e-174 616.7 332 90.7
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.1e-174 616.7 332 91.0
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.4e-174 616.3 332 91.0
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.4e-174 616.3 338 89.9
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.4e-174 615.5 332 91.0
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 3.1e-174 615.1 332 91.0
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 4.0e-174 614.8 332 91.0
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 5.3e-174 614.4 332 91.0
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 6.9e-174 614.0 332 90.7
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 9.0e-174 613.6 338 89.6
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.2e-173 613.2 337 89.9
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 1.2e-173 613.2 338 89.1
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 2.6e-173 612.1 338 89.1
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 2.6e-173 612.1 332 90.4
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 4.5e-173 611.3 339 90.0
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.7e-172 609.4 333 89.8
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 2.2e-172 609.0 334 89.8
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.2e-172 609.0 332 90.1
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 2.9e-172 608.6 332 89.5
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 3.8e-172 608.2 336 89.3
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 3.8e-172 608.2 333 89.8
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 4.9e-172 607.8 335 89.0
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 4.9e-172 607.8 335 89.9
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 4.9e-172 607.8 333 89.5
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 6.5e-172 607.4 334 89.5
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 8.4e-172 607.1 339 88.5
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 8.4e-172 607.1 335 89.6
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 8.4e-172 607.1 332 89.2
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.1e-171 606.7 332 89.8
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.1e-171 606.7 338 88.2
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 3.2e-171 605.1 332 89.2
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 4.2e-171 604.7 332 89.5
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 4.2e-171 604.7 332 89.5
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 4.2e-171 604.7 332 89.5
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 4.2e-171 604.7 332 89.5
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 4.2e-171 604.7 333 88.9
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 4.2e-171 604.7 337 87.2
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 5.5e-171 604.4 333 88.9
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 5.5e-171 604.4 333 88.9
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 9.3e-171 603.6 337 88.4
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.3e-171 603.6 336 88.1
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 9.3e-171 603.6 332 89.8
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.2e-170 603.2 339 88.2
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.2e-170 603.2 336 88.4
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 2.1e-170 602.4 332 89.5
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 2.1e-170 602.4 339 88.5
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.7e-170 602.1 333 88.0
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 3.5e-170 601.7 338 88.2
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 4.6e-170 601.3 339 88.2
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 4.6e-170 601.3 339 88.2
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 6.0e-170 600.9 338 87.9
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.3e-169 599.7 338 87.9
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.3e-169 599.0 336 88.1
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.9e-169 598.2 332 88.6
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 8.7e-169 597.0 331 87.6
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.1e-168 596.7 341 86.8
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.1e-168 596.7 332 88.0
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.5e-168 595.5 332 87.7
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 3.3e-168 595.1 336 86.9
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 3.3e-168 595.1 341 86.5
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.3e-168 595.1 341 86.5
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.8e-167 592.0 341 85.9
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 6.2e-167 590.9 318 90.9
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 8.2e-167 590.5 332 86.7
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.1e-166 590.1 342 85.7
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.2e-165 586.6 352 83.2
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.5e-165 586.3 320 90.3
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 5.8e-165 584.3 337 85.2
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.0e-164 583.6 338 84.0
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.4e-163 579.7 375 78.4
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.4e-163 579.7 337 84.3
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 3.2e-163 578.6 338 84.9
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 4.2e-163 578.2 338 84.3
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 4.2e-163 578.2 333 85.9
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 5.5e-163 577.8 338 84.6
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 7.1e-163 577.4 338 84.6
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 9.3e-163 577.0 338 84.6
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 9.3e-163 577.0 338 84.9
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 9.3e-163 577.0 313 90.4
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.2e-162 576.6 333 85.3
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 2.1e-162 575.9 338 84.3
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 2.7e-162 575.5 333 85.3
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 3.5e-162 575.1 338 84.0
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 6.1e-162 574.3 338 84.3
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 6.1e-162 574.3 333 85.0
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 6.1e-162 574.3 333 85.0
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 6.1e-162 574.3 333 85.0
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 6.1e-162 574.3 333 85.0
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 1.0e-161 573.5 338 84.0
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 1.0e-161 573.5 309 89.3
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 1.0e-161 573.5 332 86.7
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 1.3e-161 573.2 338 84.0
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 8.7e-161 570.5 334 84.1
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 1.1e-160 570.1 329 85.1
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 1.5e-160 569.7 309 89.6
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 3.3e-160 568.5 327 84.7
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.6e-159 566.2 338 83.4
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.6e-159 566.2 334 83.8
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 2.2e-159 565.8 313 88.8
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.8e-159 565.5 338 81.7
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 3.7e-159 565.1 313 87.2
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 6.3e-159 564.3 348 81.3
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.1e-158 563.5 322 86.6
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 2.9e-156 555.4 332 84.6
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 5.0e-156 554.7 336 78.0
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.5e-156 554.3 339 82.6
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.5e-155 552.4 334 79.9
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 4.2e-155 551.6 334 78.4
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 2.0e-152 542.7 314 85.4
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 7.4e-152 540.8 336 77.4
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 3.7e-151 538.5 380 74.2
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 4.1e-150 535.0 336 75.6
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 4.5e-149 531.6 417 68.1
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 2.3e-145 519.2 364 74.5
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 5.3e-142 508.1 289 86.5
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 3.8e-140 501.9 271 90.8
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 3.6e-138 495.4 338 76.6
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 6.1e-138 494.6 262 92.7
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.8e-137 493.0 265 92.5
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.8e-137 493.0 265 92.5
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 5.2e-137 491.5 320 73.8
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.7e-132 476.5 338 74.9
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 9.4e-131 470.7 332 73.8
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.7e-122 442.6 341 66.0
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 8.8e-121 437.6 238 89.1
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 7.5e-120 434.5 251 84.5
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 6.6e-116 421.4 311 63.7
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 3.4e-112 409.1 251 80.1
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 2.0e-109 399.8 245 78.4
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 5.0e-108 395.2 216 88.4
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 3.1e-105 386.0 330 60.0
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 4.1e-102 375.6 315 57.8
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 1.0e-55 221.5 132 84.1
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 4.6e-45 186.0 168 60.1
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.8e-33 147.5 180 52.8
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 3.2e-30 136.7 79 82.3
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.8e-28 131.0 80 78.8
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 2.2e-26 124.0 73 82.2
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 6.3e-26 122.5 74 78.4
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 9.4e-22 108.6 108 56.5
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 5.9e-16 89.4 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.2e-13 81.6 99 50.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 6.8e-12 75.9 56 73.2
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 4.4e-11 73.2 42 78.6
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.1e-09 68.6 59 61.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.1e-09 68.6 59 61.0
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 4.1e-09 66.6 100 42.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 2.5e-06 57.4 126 35.7
Medtr5g030880 Medicago truncatula HOM05D000871 ORTHO05D036729 9.5e-06 55.5 56 57.1


User provided reference genes

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