Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 9.3e-86 320.5 198 100.0
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.0e-40 169.9 201 55.7
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.0e-40 169.9 201 53.7
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.4e-38 163.7 207 58.9
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.9e-38 163.3 194 59.3
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 5.5e-38 161.8 201 59.2
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.6e-37 160.2 201 52.7
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 2.1e-37 159.8 206 59.7
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 7.9e-37 157.9 199 57.8
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.3e-36 156.4 201 54.2
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.1e-36 155.2 209 56.9
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 6.7e-36 154.8 204 57.8
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 8.8e-36 154.5 203 50.2
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 1.5e-35 153.7 201 51.7
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.0e-35 153.3 200 50.0
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 4.4e-35 152.1 138 63.0
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 4.4e-35 152.1 202 52.5
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.7e-35 151.8 138 63.0
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 5.7e-35 151.8 208 59.1
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 7.4e-35 151.4 203 57.6
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 1.3e-34 150.6 201 53.2
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.7e-34 150.2 137 59.1
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 1.7e-34 150.2 201 53.2
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 3.7e-34 149.1 138 59.4
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.4e-33 147.1 205 58.0
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 1.4e-33 147.1 180 59.4
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.8e-33 146.7 206 50.5
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.8e-33 146.7 201 54.7
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 3.1e-33 146.0 134 58.2
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 3.1e-33 146.0 210 54.8
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 7.0e-33 144.8 220 51.8
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 9.1e-33 144.4 198 59.6
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 9.1e-33 144.4 204 58.3
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 1.6e-32 143.7 140 60.0
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 2.0e-32 143.3 138 58.0
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.0e-32 143.3 199 56.8
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 2.0e-32 143.3 201 60.2
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 2.6e-32 142.9 200 46.5
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 2.6e-32 142.9 199 52.8
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 4.5e-32 142.1 140 58.6
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 4.5e-32 142.1 132 58.3
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 4.5e-32 142.1 199 58.3
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 5.9e-32 141.7 201 46.3
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 5.9e-32 141.7 206 55.3
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 5.9e-32 141.7 134 57.5
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 5.9e-32 141.7 199 56.8
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 7.7e-32 141.4 138 56.5
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 7.7e-32 141.4 204 55.4
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.3e-31 140.6 125 56.8
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 2.2e-31 139.8 140 56.4
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 5.0e-31 138.7 204 47.5
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 6.5e-31 138.3 208 46.2
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 8.5e-31 137.9 205 55.1
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 8.5e-31 137.9 201 53.7
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 8.5e-31 137.9 206 49.5
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.9e-30 136.7 185 53.0
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 2.5e-30 136.3 136 57.4
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 2.5e-30 136.3 203 49.8
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 3.2e-30 136.0 142 55.6
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 4.2e-30 135.6 202 46.0
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.1e-29 133.3 133 53.4
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.1e-29 133.3 126 57.1
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 3.6e-29 132.5 119 59.7
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 3.6e-29 132.5 178 53.9
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 4.7e-29 132.1 202 55.9
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 4.7e-29 132.1 139 54.0
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 4.7e-29 132.1 129 55.8
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.0e-28 131.0 203 49.3
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.0e-28 131.0 139 51.8
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 3.0e-28 129.4 127 58.3
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 5.2e-28 128.6 140 52.9
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 5.2e-28 128.6 200 45.0
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 5.2e-28 128.6 133 56.4
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 6.7e-28 128.3 194 53.1
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 8.8e-28 127.9 142 53.5
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.1e-27 127.5 131 57.3
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 2.0e-27 126.7 142 52.8
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 4.4e-27 125.6 140 52.9
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 4.4e-27 125.6 145 52.4
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 5.7e-27 125.2 201 53.2
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.7e-26 123.6 139 50.4
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.8e-26 122.1 139 53.2
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 6.3e-26 121.7 125 53.6
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 6.3e-26 121.7 117 60.7
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.4e-25 120.6 199 48.7
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.4e-25 120.6 198 50.5
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.8e-25 120.2 198 49.0
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 2.4e-25 119.8 198 49.0
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 4.1e-25 119.0 218 42.7
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 5.3e-25 118.6 138 50.0
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 5.3e-25 118.6 139 51.8
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 5.3e-25 118.6 130 54.6
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 5.3e-25 118.6 83 69.9
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 9.1e-25 117.9 201 42.3
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.2e-24 117.5 137 52.6
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.0e-24 116.7 195 43.1
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 2.7e-24 116.3 133 51.9
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 2.7e-24 116.3 130 53.1
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 5.9e-24 115.2 105 57.1
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 7.7e-24 114.8 196 48.0
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 3.8e-23 112.5 123 54.5
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.8e-23 112.5 202 42.1
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.1e-22 110.9 123 52.0
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.1e-22 110.9 208 50.0
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.9e-22 110.2 204 50.0
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 3.2e-22 109.4 145 49.0
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.2e-21 107.5 83 63.9
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.2e-21 107.5 122 52.5
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.1e-21 106.7 71 73.2
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 2.7e-21 106.3 85 67.1
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 2.7e-21 106.3 127 50.4
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 3.6e-21 105.9 81 66.7
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 6.1e-21 105.1 122 54.9
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 6.1e-21 105.1 121 52.1
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 6.1e-21 105.1 122 54.9
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 6.1e-21 105.1 122 54.9
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 6.1e-21 105.1 121 52.1
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 6.1e-21 105.1 146 59.6
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 8.0e-21 104.8 84 63.1
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.4e-20 104.0 121 53.7
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 2.3e-20 103.2 207 44.0
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 3.0e-20 102.8 88 62.5
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 8.8e-20 101.3 127 46.5
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 8.8e-20 101.3 81 64.2
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.5e-19 100.5 121 51.2
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.5e-19 100.5 121 51.2
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 4.4e-19 99.0 123 49.6
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 4.4e-19 99.0 123 49.6
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 4.4e-19 99.0 128 48.4
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 4.4e-19 99.0 128 48.4
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 7.5e-19 98.2 125 48.8
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.7e-18 97.1 128 47.7
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 2.2e-18 96.7 127 47.2
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 6.3e-18 95.1 157 47.8
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.2e-16 90.9 63 63.5
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 3.5e-16 89.4 121 48.8
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.0e-15 87.8 60 68.3
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 5.0e-15 85.5 196 46.9
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 6.5e-15 85.1 74 59.5
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 5.5e-14 82.0 186 37.6
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 4.7e-13 79.0 146 39.0
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.0e-12 77.8 138 52.2
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.0e-12 76.3 59 61.0
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.3e-10 70.9 47 70.2
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.7e-10 70.5 134 36.6
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.2e-10 70.1 126 49.2
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 2.2e-10 70.1 53 66.0
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 6.3e-10 68.6 120 39.2
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 8.3e-10 68.2 125 40.8
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 5.4e-09 65.5 85 43.5
FAN10G1293 Fragaria x ananassa HOM05D004771 ORTHO05D005565 3.3e-06 56.2 43 65.1
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 5.6e-06 55.5 102 36.3


User provided reference genes

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