Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3070 Punica granatum HOM05D003656 ORTHO05D004211 3.8e-28 127.9 85 100.0
TAR623G1327 Trochodendron aralioides HOM05D003656 ORTHO05D004211 1.1e-16 89.7 87 63.2
Glyma.03G179000 Glycine max HOM05D003656 ORTHO05D004211 1.5e-16 89.4 85 63.5
Manes.09G076337 Manihot esculenta HOM05D003656 ORTHO05D004211 1.9e-16 89.0 85 63.5
Manes.08G004601 Manihot esculenta HOM05D003656 ORTHO05D004211 3.3e-16 88.2 90 63.3
Cfa017524 Carpinus fangiana HOM05D003656 ORTHO05D004211 4.3e-16 87.8 87 63.2
CiPaw.09G178500 Carya illinoinensis HOM05D003656 ORTHO05D004211 4.3e-16 87.8 87 59.8
Haze_20625 Corylus avellana HOM05D003656 ORTHO05D004211 4.3e-16 87.8 87 63.2
Haze_20628 Corylus avellana HOM05D003656 ORTHO05D004211 4.3e-16 87.8 87 63.2
Dinv37267 Davidia involucrata HOM05D003656 ORTHO05D004211 5.7e-16 87.4 87 60.9
CiPaw.10G136100 Carya illinoinensis HOM05D003656 ORTHO05D004211 9.7e-16 86.7 87 60.9
Gohir.D09G146900 Gossypium hirsutum HOM05D003656 ORTHO05D004211 1.3e-15 86.3 88 61.4
Gorai.006G168100 Gossypium raimondii HOM05D003656 ORTHO05D004211 1.3e-15 86.3 88 61.4
Nn2g10711 Nelumbo nucifera HOM05D003656 ORTHO05D004211 1.3e-15 86.3 85 61.2
TAR633G2048 Trochodendron aralioides HOM05D003656 ORTHO05D004211 1.3e-15 86.3 86 61.6
Lj1g0024655 Lotus japonicus HOM05D003656 ORTHO05D004211 1.6e-15 85.9 85 57.6
Duzib128G1560 Durio zibethinus HOM05D003656 ORTHO05D004211 3.7e-15 84.7 88 60.2
Gohir.A09G151300 Gossypium hirsutum HOM05D003656 ORTHO05D004211 3.7e-15 84.7 88 59.1
Ciclev10013218m.g Citrus clementina HOM05D003656 ORTHO05D004211 4.8e-15 84.3 87 58.6
Potri.006G130200 Populus trichocarpa HOM05D003656 ORTHO05D004211 4.8e-15 84.3 89 58.4
GSVIVG01025648001 Vitis vinifera HOM05D003656 ORTHO05D004211 4.8e-15 84.3 87 58.6
CSS0043834 Camellia sinensis var. sinensis HOM05D003656 ORTHO05D004211 1.4e-14 82.8 86 60.5
MELO3C009327.2 Cucumis melo HOM05D003656 ORTHO05D004211 1.4e-14 82.8 73 68.5
Duzib093G1390 Durio zibethinus HOM05D003656 ORTHO05D004211 1.4e-14 82.8 87 58.6
CSS0018024 Camellia sinensis var. sinensis HOM05D003656 ORTHO05D004211 1.8e-14 82.4 87 57.5
Cc06_g03710 Coffea canephora HOM05D003656 ORTHO05D004211 3.1e-14 81.6 86 57.0
CsaV3_6G039400 Cucumis sativus L. HOM05D003656 ORTHO05D004211 4.1e-14 81.3 90 57.8
Dinv32777 Davidia involucrata HOM05D003656 ORTHO05D004211 4.1e-14 81.3 77 62.3
Lalb_Chr25g0289191 Lupinus albus HOM05D003656 ORTHO05D004211 4.1e-14 81.3 72 63.9
Gohir.D04G114700 Gossypium hirsutum HOM05D003656 ORTHO05D004211 5.3e-14 80.9 87 58.6
Medtr7g100880 Medicago truncatula HOM05D003656 ORTHO05D004211 5.3e-14 80.9 85 54.1
Phvul.007G107500 Phaseolus vulgaris HOM05D003656 ORTHO05D004211 5.3e-14 80.9 84 59.5
Gohir.A04G075600 Gossypium hirsutum HOM05D003656 ORTHO05D004211 6.9e-14 80.5 87 57.5
Lalb_Chr02g0156271 Lupinus albus HOM05D003656 ORTHO05D004211 6.9e-14 80.5 87 56.3
Gohir.A01G216200 Gossypium hirsutum HOM05D003656 ORTHO05D004211 9.0e-14 80.1 87 56.3
Gorai.009G419300 Gossypium raimondii HOM05D003656 ORTHO05D004211 9.0e-14 80.1 87 57.5
Actinidia05263 Actinidia chinensis HOM05D000190 ORTHO05D000113 1.2e-13 79.7 87 56.3
Actinidia13096 Actinidia chinensis HOM05D003656 ORTHO05D004211 1.2e-13 79.7 87 56.3
Glyma.13G138200 Glycine max HOM05D003656 ORTHO05D004211 1.5e-13 79.3 84 58.3
CsaV3_3G035680 Cucumis sativus L. HOM05D000026 ORTHO05D001292 2.0e-13 79.0 78 62.8
Eucgr.A01168 Eucalyptus grandis HOM05D003656 ORTHO05D004211 2.0e-13 79.0 84 59.5
TAR369G0518 Trochodendron aralioides HOM05D003656 ORTHO05D004211 2.0e-13 79.0 77 59.7
ClCG10G020440 Citrullus lanatus HOM05D003656 ORTHO05D004211 2.6e-13 78.6 82 59.8
TPR.G18268 Trifolium pratense HOM05D003656 ORTHO05D004211 2.6e-13 78.6 65 67.7
Gohir.D01G205000 Gossypium hirsutum HOM05D003656 ORTHO05D004211 3.4e-13 78.2 86 57.0
Gorai.002G249300 Gossypium raimondii HOM05D003656 ORTHO05D004211 3.4e-13 78.2 86 57.0
Nn2g13031 Nelumbo nucifera HOM05D003656 ORTHO05D004211 4.5e-13 77.8 85 55.3
ClCG04G008890 Citrullus lanatus HOM05D003656 ORTHO05D004211 5.9e-13 77.4 72 62.5
Nitab4.5_0000754g0160 Nicotiana tabacum HOM05D003656 ORTHO05D004211 5.9e-13 77.4 72 62.5
Duzib106G1222 Durio zibethinus HOM05D003656 ORTHO05D004211 7.7e-13 77.0 87 57.5
Medtr7g100890 Medicago truncatula HOM05D001219 ORTHO05D001017 7.7e-13 77.0 73 60.3
Medtr7g100905 Medicago truncatula HOM05D003656 ORTHO05D004211 7.7e-13 77.0 65 66.2
Thecc.05G056100 Theobroma cacao HOM05D003656 ORTHO05D004211 7.7e-13 77.0 73 61.6
AUR62025008 Chenopodium quinoa HOM05D003656 ORTHO05D004211 1.3e-12 76.3 74 60.8
MBI02_g25821_MAGBIO Magnolia biondii HOM05D003656 ORTHO05D004211 1.3e-12 76.3 71 63.4
Nitab4.5_0003973g0060 Nicotiana tabacum HOM05D003656 ORTHO05D004211 1.3e-12 76.3 72 61.1
arahy.Tifrunner.gnm1.ann1.5V2EV5 Arachis hypogaea HOM05D003656 ORTHO05D004211 1.7e-12 75.9 84 54.8
arahy.Tifrunner.gnm1.ann1.FC0UQU Arachis hypogaea HOM05D003656 ORTHO05D004211 1.7e-12 75.9 84 54.8
HanXRQChr02g0052001 Helianthus annuus HOM05D003656 ORTHO05D004211 1.7e-12 75.9 83 55.4
Lj5g0004266 Lotus japonicus HOM05D003656 ORTHO05D004211 1.7e-12 75.9 75 54.7
QL04p031290 Quercus lobata HOM05D003656 ORTHO05D004211 1.7e-12 75.9 75 60.0
QL07p045029 Quercus lobata HOM05D003656 ORTHO05D004211 1.7e-12 75.9 75 60.0
SEGI_21131 Sequoiadendron giganteum HOM05D003656 ORTHO05D004211 1.7e-12 75.9 91 51.6
PGSC0003DMG401017590 Solanum tuberosum HOM05D003656 ORTHO05D004211 1.7e-12 75.9 62 67.7
Nitab4.5_0003871g0010 Nicotiana tabacum HOM05D003656 ORTHO05D004211 2.2e-12 75.5 77 58.4
Psat3g043880 Pisum sativum HOM05D003656 ORTHO05D004211 2.2e-12 75.5 65 66.2
TPR.G18279 Trifolium pratense HOM05D003656 ORTHO05D004211 2.9e-12 75.1 62 69.4
TWI74G0472 Tripterygium wilfordii HOM05D003656 ORTHO05D004211 2.9e-12 75.1 84 54.8
CAN.G933.3 Capsicum annuum HOM05D003656 ORTHO05D004211 3.8e-12 74.7 62 66.1
Hma1.2p1_0614F.1_g189580 Hydrangea macrophylla HOM05D003656 ORTHO05D004211 3.8e-12 74.7 61 65.6
Nitab4.5_0008568g0020 Nicotiana tabacum HOM05D003656 ORTHO05D004211 3.8e-12 74.7 77 57.1
Sopen10g035430 Solanum pennellii HOM05D003656 ORTHO05D004211 3.8e-12 74.7 62 66.1
Hma1.2p1_0111F.1_g054020 Hydrangea macrophylla HOM05D003656 ORTHO05D004211 5.0e-12 74.3 87 55.2
Peaxi162Scf00005g00388 Petunia axillaris HOM05D003656 ORTHO05D004211 5.0e-12 74.3 85 55.3
Sed0008432 Sechium edule HOM05D003656 ORTHO05D004211 5.0e-12 74.3 73 57.5
MSTRG.5727 Avicennia marina HOM05D003656 ORTHO05D004211 6.5e-12 73.9 87 51.7
CDE04G2181 Ceratophyllum demersum HOM05D003656 ORTHO05D004211 6.5e-12 73.9 74 55.4
Lsat_1_v5_gn_6_30301 Lactuca sativa HOM05D003656 ORTHO05D004211 8.5e-12 73.6 72 58.3
PSO384G0375 Papaver somniferum HOM05D003656 ORTHO05D004211 8.5e-12 73.6 64 62.5
Solyc09g007500.3 Solanum lycopersicum HOM05D003656 ORTHO05D004211 8.5e-12 73.6 82 51.2
Sopen09g002370 Solanum pennellii HOM05D003656 ORTHO05D004211 8.5e-12 73.6 82 51.2
TWI53G0682 Tripterygium wilfordii HOM05D003656 ORTHO05D004211 8.5e-12 73.6 85 52.9
Ah.01g015060 Amaranthus hybridus HOM05D003656 ORTHO05D004211 1.1e-11 73.2 84 51.2
Oeu060097.1 Olea europaea HOM05D003656 ORTHO05D004211 1.1e-11 73.2 64 65.6
Psat0s1011g0080 Pisum sativum HOM05D003656 ORTHO05D004211 1.1e-11 73.2 65 64.6
ECA233G0967 Erigeron canadensis HOM05D003656 ORTHO05D004211 1.4e-11 72.8 64 62.5
Oeu014968.1 Olea europaea HOM05D003656 ORTHO05D000397 1.4e-11 72.8 64 65.6
Sed0001939 Sechium edule HOM05D003656 ORTHO05D004211 1.4e-11 72.8 73 57.5
ATR0716G020 Amborella trichopoda HOM05D003656 ORTHO05D004211 1.9e-11 72.4 62 62.9
Migut.L01670 Erythranthe guttata HOM05D003656 ORTHO05D004211 1.9e-11 72.4 89 55.1
Nitab4.5_0006156g0010 Nicotiana tabacum HOM05D003656 ORTHO05D004211 1.9e-11 72.4 62 66.1
GSVIVG01025155001 Vitis vinifera HOM05D003656 ORTHO05D004211 1.9e-11 72.4 85 56.5
Peaxi162Scf00488g00093 Petunia axillaris HOM05D003656 ORTHO05D004211 2.5e-11 72.0 62 64.5
HanXRQChr13g0399601 Helianthus annuus HOM05D003656 ORTHO05D004211 3.2e-11 71.6 64 60.9
Hund20195 Selenicereus undatus HOM05D003656 ORTHO05D004211 3.2e-11 71.6 85 52.9
Glyma.19G179700 Glycine max HOM05D003656 ORTHO05D004211 7.2e-11 70.5 85 55.3
PGSC0003DMG400001772 Solanum tuberosum HOM05D003656 ORTHO05D004211 9.4e-11 70.1 82 50.0
vmacro08724 Vaccinium macrocarpon HOM05D003656 ORTHO05D004211 9.4e-11 70.1 70 61.4
Os04g0408700 Oryza sativa ssp. japonica HOM05D003656 ORTHO05D004211 4.6e-10 67.8 85 49.4
Phvul.001G175700 Phaseolus vulgaris HOM05D003656 ORTHO05D004211 4.6e-10 67.8 84 53.6
HPP92_018116 Vanilla planifolia HOM05D003656 ORTHO05D004211 4.6e-10 67.8 62 58.1
Prupe.6G239600 Prunus persica HOM05D003656 ORTHO05D004211 6.1e-10 67.4 86 51.2
Mapoly0048s0104 Marchantia polymorpha HOM05D003656 ORTHO05D004211 7.9e-10 67.0 86 47.7
CARHR084160 Cardamine hirsuta HOM05D003656 ORTHO05D004211 1.4e-09 66.2 62 56.5
MD12G1121800 Malus domestica HOM05D003656 ORTHO05D004211 1.4e-09 66.2 85 48.2
CARHR131630 Cardamine hirsuta HOM05D003656 ORTHO05D004211 2.3e-09 65.5 64 54.7
Lalb_Chr01g0018961 Lupinus albus HOM05D003656 ORTHO05D004211 2.3e-09 65.5 65 58.5
SalBow3G0799 Salvia bowleyana HOM05D003656 ORTHO05D004211 2.3e-09 65.5 75 52.0
SHI12537 Sapria himalayana HOM05D003656 ORTHO05D004211 2.3e-09 65.5 73 50.7
AT3G53370 Arabidopsis thaliana HOM05D003656 ORTHO05D004211 3.0e-09 65.1 74 52.7
C05p58400 Brassica napus HOM05D003656 ORTHO05D004211 3.0e-09 65.1 62 54.8
AL5G34280 Arabidopsis lyrata HOM05D003656 ORTHO05D004211 3.9e-09 64.7 83 50.6
Os04g0408900 Oryza sativa ssp. japonica HOM05D003656 ORTHO05D004211 3.9e-09 64.7 68 54.4
Nitab4.5_0000669g0100 Nicotiana tabacum HOM05D003656 ORTHO05D004211 6.7e-09 63.9 77 53.2
Potri.016G087400 Populus trichocarpa HOM05D003656 ORTHO05D004211 8.8e-09 63.5 85 56.5
BraA04t16321Z Brassica rapa HOM05D000026 ORTHO05D001292 1.1e-08 63.2 74 50.0
SalBow5G4464 Salvia bowleyana HOM05D003656 ORTHO05D004211 1.5e-08 62.8 85 51.8
A07p21590 Brassica napus HOM05D003656 ORTHO05D004211 1.9e-08 62.4 74 48.6
BolC4t25493H Brassica oleracea HOM05D000026 ORTHO05D001292 1.9e-08 62.4 81 48.1
BolC6t37304H Brassica oleracea HOM05D003656 ORTHO05D004211 1.9e-08 62.4 74 48.6
SalBow5G0952 Salvia bowleyana HOM05D003656 ORTHO05D004211 1.9e-08 62.4 85 51.8
A04p06180 Brassica napus HOM05D000026 ORTHO05D001292 2.5e-08 62.0 74 48.6
C04p39250 Brassica napus HOM05D003656 ORTHO05D004211 2.5e-08 62.0 74 48.6
Glyma.10G050700 Glycine max HOM05D003656 ORTHO05D004211 2.5e-08 62.0 84 58.3
C06p21180 Brassica napus HOM05D003656 ORTHO05D004211 3.3e-08 61.6 64 54.7
BraA07t29841Z Brassica rapa HOM05D003656 ORTHO05D004211 3.3e-08 61.6 64 54.7
CDE07G1192 Ceratophyllum demersum HOM05D003656 ORTHO05D004211 3.3e-08 61.6 74 48.6
AagrBONN_evm.TU.Sc2ySwM_362.1629 Anthoceros agrestis HOM05D003656 ORTHO05D004211 4.3e-08 61.2 80 45.0
Carub.0005s1992 Capsella rubella HOM05D003656 ORTHO05D004211 4.3e-08 61.2 83 49.4
EL10Ac9g22481 Beta vulgaris HOM05D003656 ORTHO05D004211 5.7e-08 60.8 64 56.2
BcaC02g09170 Brassica carinata HOM05D000026 ORTHO05D001292 5.7e-08 60.8 64 54.7
Sc06g0010000 Simmondsia chinensis HOM05D003656 ORTHO05D004211 5.7e-08 60.8 78 47.4
Atru.chr8.1893 Acer truncatum HOM05D003656 ORTHO05D004211 7.4e-08 60.5 77 59.7
HPP92_015412 Vanilla planifolia HOM05D003656 ORTHO05D004211 7.4e-08 60.5 62 51.6
Thhalv10010878m.g Eutrema salsugineum HOM05D003656 ORTHO05D004211 1.3e-07 59.7 83 48.2
Pp3c14_22690 Physcomitrium patens HOM05D003656 ORTHO05D004211 1.3e-07 59.7 66 48.5
Lalb_Chr21g0314731 Lupinus albus HOM05D003656 ORTHO05D004211 1.7e-07 59.3 77 58.4
Aa31LG5G22410 Aethionema arabicum HOM05D003656 ORTHO05D004211 2.2e-07 58.9 71 50.7
CARHR163250 Cardamine hirsuta HOM05D003656 ORTHO05D004211 2.2e-07 58.9 74 48.6
unitig_26.g9219 Utricularia gibba HOM05D003656 ORTHO05D004211 2.2e-07 58.9 64 57.8
Lalb_Chr20g0112831 Lupinus albus HOM05D003656 ORTHO05D004211 2.8e-07 58.5 65 67.7
Pp3c1_39960 Physcomitrium patens HOM05D003656 ORTHO05D004211 3.7e-07 58.2 83 43.4
BcaB01g00283 Brassica carinata HOM05D003656 ORTHO05D004211 4.8e-07 57.8 64 51.6
BcaC05g29696 Brassica carinata HOM05D003656 ORTHO05D004211 4.8e-07 57.8 79 45.6
RcHm_v2.0_Chr3g0469111 Rosa chinensis HOM05D003656 ORTHO05D004211 4.8e-07 57.8 87 46.0
CAN.G1091.10 Capsicum annuum HOM05D003656 ORTHO05D004211 6.3e-07 57.4 72 50.0
MD04G1102100 Malus domestica HOM05D003656 ORTHO05D004211 8.2e-07 57.0 85 42.4
Aqoxy4G03232 Aquilegia oxysepala HOM05D003656 ORTHO05D004211 1.4e-06 56.2 80 46.2
FvH4_6g15550 Fragaria vesca HOM05D003656 ORTHO05D004211 1.4e-06 56.2 65 52.3
FAN02G2121 Fragaria x ananassa HOM05D003656 ORTHO05D004211 1.4e-06 56.2 65 52.3
FAN05G2348 Fragaria x ananassa HOM05D003656 ORTHO05D004211 1.4e-06 56.2 65 52.3
FAN09G1094 Fragaria x ananassa HOM05D003656 ORTHO05D004211 1.4e-06 56.2 65 52.3
FAN14G0104 Fragaria x ananassa HOM05D003656 ORTHO05D004211 1.4e-06 56.2 65 52.3
Sp5g08980 Schrenkiella parvula HOM05D003656 ORTHO05D004211 1.8e-06 55.8 74 45.9
Cpa.g.sc638.2 Carica papaya HOM05D003656 ORTHO05D004211 2.4e-06 55.5 89 56.2
BcaB02g07791 Brassica carinata HOM05D003656 ORTHO05D004211 4.1e-06 54.7 74 45.9
A05p39380 Brassica napus HOM05D003656 ORTHO05D004211 9.1e-06 53.5 62 48.4
BolC5t34493H Brassica oleracea HOM05D003656 ORTHO05D004211 9.1e-06 53.5 62 48.4
BraA05t22719Z Brassica rapa HOM05D003656 ORTHO05D004211 9.1e-06 53.5 62 48.4
Carub.0003s0883 Capsella rubella HOM05D003656 ORTHO05D004211 9.1e-06 53.5 62 48.4
Sp3g08080 Schrenkiella parvula HOM05D003656 ORTHO05D004211 9.1e-06 53.5 62 48.4


User provided reference genes

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