Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3065 Punica granatum HOM05D002452 ORTHO05D006585 1.2e-45 186.0 88 100.0
PGR083G1274 Punica granatum HOM05D002452 ORTHO05D006585 8.8e-12 73.6 38 92.1
Manes.15G097600 Manihot esculenta HOM05D002452 ORTHO05D006585 2.5e-11 72.0 38 89.5
Gohir.A13G150900 Gossypium hirsutum HOM05D002452 ORTHO05D006585 3.3e-11 71.6 38 84.2
Gohir.D13G155000 Gossypium hirsutum HOM05D002452 ORTHO05D006585 3.3e-11 71.6 38 84.2
Gorai.013G175400 Gossypium raimondii HOM05D002452 ORTHO05D006585 3.3e-11 71.6 38 84.2
Cpa.g.sc77.57 Carica papaya HOM05D002452 ORTHO05D006585 4.3e-11 71.2 38 86.8
GSVIVG01014101001 Vitis vinifera HOM05D002452 ORTHO05D006585 5.7e-11 70.9 38 81.6
Haze_09242 Corylus avellana HOM05D002452 ORTHO05D006585 9.7e-11 70.1 38 84.2
Dinv13366 Davidia involucrata HOM05D002452 ORTHO05D006585 9.7e-11 70.1 38 84.2
Gohir.A01G048100 Gossypium hirsutum HOM05D002452 ORTHO05D006585 1.3e-10 69.7 38 81.6
Gohir.D01G038800 Gossypium hirsutum HOM05D002452 ORTHO05D006585 1.3e-10 69.7 38 81.6
Gorai.002G048000 Gossypium raimondii HOM05D002452 ORTHO05D006585 1.3e-10 69.7 38 81.6
CANSAT56G0836 Cannabis sativa HOM05D002452 ORTHO05D006585 2.2e-10 68.9 38 84.2
Cfa019511 Carpinus fangiana HOM05D002452 ORTHO05D006585 2.2e-10 68.9 38 81.6
ClCG11G017210 Citrullus lanatus HOM05D002452 ORTHO05D006585 2.8e-10 68.6 38 84.2
MELO3C025669.2 Cucumis melo HOM05D002452 ORTHO05D006585 2.8e-10 68.6 38 84.2
Eucgr.F01365 Eucalyptus grandis HOM05D002452 ORTHO05D006585 2.8e-10 68.6 37 83.8
Atru.chr2.2011 Acer truncatum HOM05D002452 ORTHO05D006585 3.7e-10 68.2 38 81.6
Hma1.2p1_0050F.1_g028830 Hydrangea macrophylla HOM05D002452 ORTHO05D006585 3.7e-10 68.2 37 83.8
QL08p024701 Quercus lobata HOM05D002452 ORTHO05D006585 3.7e-10 68.2 64 56.2
THA.LOC104813996 Tarenaya hassleriana HOM05D002452 ORTHO05D006585 3.7e-10 68.2 37 83.8
Actinidia12600 Actinidia chinensis HOM05D002452 ORTHO05D006585 4.8e-10 67.8 38 81.6
CAN.G443.1 Capsicum annuum HOM05D002452 ORTHO05D006585 4.8e-10 67.8 38 84.2
Sabra16G0253200 Salix brachista HOM05D002452 ORTHO05D006585 4.8e-10 67.8 71 50.7
Sed0014572 Sechium edule HOM05D002452 ORTHO05D006585 4.8e-10 67.8 38 81.6
Solyc12g014390.3 Solanum lycopersicum HOM05D002452 ORTHO05D006585 4.8e-10 67.8 38 84.2
Sopen12g006160 Solanum pennellii HOM05D002452 ORTHO05D006585 4.8e-10 67.8 38 84.2
PGSC0003DMG400015392 Solanum tuberosum HOM05D002452 ORTHO05D006585 4.8e-10 67.8 38 84.2
TWI38G1964 Tripterygium wilfordii HOM05D002452 ORTHO05D006585 4.8e-10 67.8 37 83.8
CsaV3_4G032830 Cucumis sativus L. HOM05D002452 ORTHO05D006585 6.3e-10 67.4 38 81.6
Nitab4.5_0004042g0010 Nicotiana tabacum HOM05D002452 ORTHO05D006585 6.3e-10 67.4 38 81.6
Oeu010028.4 Olea europaea HOM05D002452 ORTHO05D006585 6.3e-10 67.4 51 66.7
Peaxi162Scf00000g07410 Petunia axillaris HOM05D002452 ORTHO05D006585 6.3e-10 67.4 38 81.6
Peaxi162Scf00013g00028 Petunia axillaris HOM05D002452 ORTHO05D006585 6.3e-10 67.4 38 81.6
Thecc.07G130500 Theobroma cacao HOM05D002452 ORTHO05D006585 6.3e-10 67.4 36 86.1
CiPaw.12G110400 Carya illinoinensis HOM05D002452 ORTHO05D006585 8.2e-10 67.0 38 81.6
Gohir.A02G070000 Gossypium hirsutum HOM05D002452 ORTHO05D006585 8.2e-10 67.0 37 81.1
MD11G1269500 Malus domestica HOM05D002452 ORTHO05D006585 8.2e-10 67.0 38 81.6
Cc05_g10750 Coffea canephora HOM05D002452 ORTHO05D006585 1.1e-09 66.6 36 83.3
DCAR_019610 Daucus carota HOM05D002452 ORTHO05D006585 1.1e-09 66.6 38 81.6
DCAR_019612 Daucus carota HOM05D002452 ORTHO05D006585 1.1e-09 66.6 38 81.6
Sed0027576 Sechium edule HOM05D002452 ORTHO05D006585 1.1e-09 66.6 38 81.6
Solyc07g062190.4 Solanum lycopersicum HOM05D002452 ORTHO05D006585 1.1e-09 66.6 38 78.9
Sopen07g030470 Solanum pennellii HOM05D002452 ORTHO05D006585 1.1e-09 66.6 38 78.9
PGSC0003DMG400007062 Solanum tuberosum HOM05D002452 ORTHO05D006585 1.1e-09 66.6 38 78.9
BcaB05g25149 Brassica carinata HOM05D002452 ORTHO05D006585 1.4e-09 66.2 38 76.3
Peaxi162Scf00111g01331 Petunia axillaris HOM05D002452 ORTHO05D006585 1.4e-09 66.2 38 78.9
Potri.011G106100 Populus trichocarpa HOM05D002452 ORTHO05D006585 1.4e-09 66.2 38 78.9
Prupe.4G156900 Prunus persica HOM05D002452 ORTHO05D006585 1.4e-09 66.2 38 81.6
Aqoxy1G01922 Aquilegia oxysepala HOM05D002452 ORTHO05D006585 1.8e-09 65.9 38 81.6
BcaB05g25148 Brassica carinata HOM05D002452 ORTHO05D006585 1.8e-09 65.9 38 78.9
CARHR072150 Cardamine hirsuta HOM05D002452 ORTHO05D006585 1.8e-09 65.9 38 78.9
Ciclev10021899m.g Citrus clementina HOM05D002452 ORTHO05D006585 1.8e-09 65.9 38 78.9
AL2G39030 Arabidopsis lyrata HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 78.9
AT1G78630 Arabidopsis thaliana HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 78.9
A02p22280 Brassica napus HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 78.9
A07p43900 Brassica napus HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 78.9
C02p35700 Brassica napus HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 78.9
BraA02t07233Z Brassica rapa HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 78.9
Carub.0002s2548 Capsella rubella HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 78.9
CAN.G375.47 Capsicum annuum HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 78.9
Thhalv10019066m.g Eutrema salsugineum HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 78.9
MD03G1248000 Malus domestica HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 81.6
Sp5g33720 Schrenkiella parvula HOM05D002452 ORTHO05D006585 2.4e-09 65.5 38 78.9
Rhsim06G0211400 Rhododendron simsii HOM05D002452 ORTHO05D006585 3.1e-09 65.1 37 78.4
vmacro11967 Vaccinium macrocarpon HOM05D002452 ORTHO05D006585 3.1e-09 65.1 37 78.4
Potri.001G384600 Populus trichocarpa HOM05D002452 ORTHO05D006585 4.1e-09 64.7 38 76.3
RcHm_v2.0_Chr5g0029571 Rosa chinensis HOM05D002452 ORTHO05D006585 4.1e-09 64.7 38 78.9
Nitab4.5_0000092g0390 Nicotiana tabacum HOM05D002452 ORTHO05D006585 5.3e-09 64.3 38 78.9
Oeu058458.1 Olea europaea HOM05D002452 ORTHO05D006585 5.3e-09 64.3 37 81.1
CDE10G1050 Ceratophyllum demersum HOM05D002452 ORTHO05D006585 6.9e-09 63.9 38 73.7
BcaC08g47424 Brassica carinata HOM05D002452 ORTHO05D006585 9.1e-09 63.5 38 76.3
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 9.1e-09 63.5 38 76.3
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 9.1e-09 63.5 38 76.3
CSS0019439 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006585 9.1e-09 63.5 36 80.6
CDE10G1087 Ceratophyllum demersum HOM05D002452 ORTHO05D006585 9.1e-09 63.5 38 71.1
Gohir.A11G265333 Gossypium hirsutum HOM05D002452 ORTHO05D006585 9.1e-09 63.5 44 68.2
TAR627G0906 Trochodendron aralioides HOM05D002452 ORTHO05D006585 9.1e-09 63.5 38 76.3
PSO170G5902 Papaver somniferum HOM05D002452 ORTHO05D006585 1.2e-08 63.2 38 76.3
PSO528G0086 Papaver somniferum HOM05D002452 ORTHO05D006585 1.2e-08 63.2 38 76.3
Aa31LG4G2330 Aethionema arabicum HOM05D002452 ORTHO05D006585 1.5e-08 62.8 38 76.3
BcaC08g47426 Brassica carinata HOM05D002452 ORTHO05D006585 1.5e-08 62.8 37 78.4
FAN21G2329 Fragaria x ananassa HOM05D002452 ORTHO05D006585 1.5e-08 62.8 38 76.3
MBI06_g08527_MAGBIO Magnolia biondii HOM05D002452 ORTHO05D006585 1.5e-08 62.8 38 76.3
FAN11G3657 Fragaria x ananassa HOM05D002452 ORTHO05D006585 2.0e-08 62.4 38 76.3
FAN25G2808 Fragaria x ananassa HOM05D002452 ORTHO05D006585 2.0e-08 62.4 38 76.3
MSTRG.14251 Avicennia marina HOM05D002452 ORTHO05D006585 4.5e-08 61.2 37 75.7
Os01g0749200 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006585 4.5e-08 61.2 36 77.8
SGA_v2.0_scaffold130G34270 Striga asiatica HOM05D002452 ORTHO05D006585 4.5e-08 61.2 37 73.0
Migut.H02022 Erythranthe guttata HOM05D002452 ORTHO05D006585 5.9e-08 60.8 38 76.3
Lsat_1_v5_gn_9_100460 Lactuca sativa HOM05D002452 ORTHO05D006585 5.9e-08 60.8 37 73.0
Lj1A825T64 Lonicera japonica HOM05D002452 ORTHO05D006585 7.7e-08 60.5 37 73.0
unitig_26.g9516 Utricularia gibba HOM05D001036 ORTHO05D006585 7.7e-08 60.5 36 75.0
ATR0800G053 Amborella trichopoda HOM05D002452 ORTHO05D006585 1.0e-07 60.1 38 68.4
BcaC03g15828 Brassica carinata HOM05D002452 ORTHO05D006585 1.0e-07 60.1 38 73.7
HanXRQChr03g0060471 Helianthus annuus HOM05D002452 ORTHO05D006585 1.0e-07 60.1 37 73.0
HanXRQChr14g0429531 Helianthus annuus HOM05D002452 ORTHO05D006585 1.0e-07 60.1 37 73.0
ECA240G3886 Erigeron canadensis HOM05D002452 ORTHO05D006585 1.3e-07 59.7 37 73.0
Phvul.011G168200 Phaseolus vulgaris HOM05D002452 ORTHO05D006585 1.3e-07 59.7 38 73.7
HPP92_005570 Vanilla planifolia HOM05D002452 ORTHO05D006585 1.3e-07 59.7 38 71.1
Ca_07451_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006585 1.7e-07 59.3 38 73.7
Glyma.15G209000 Glycine max HOM05D002452 ORTHO05D006585 1.7e-07 59.3 38 73.7
Ah.04g164060 Amaranthus hybridus HOM05D002452 ORTHO05D006585 2.2e-07 58.9 37 70.3
Lj3g0015531 Lotus japonicus HOM05D002452 ORTHO05D006585 3.8e-07 58.2 38 71.1
HanXRQChr13g0389701 Helianthus annuus HOM05D002452 ORTHO05D006585 5.0e-07 57.8 37 70.3
SalBow7G3921 Salvia bowleyana HOM05D002452 ORTHO05D006585 5.0e-07 57.8 37 73.0
Lalb_Chr01g0006901 Lupinus albus HOM05D002452 ORTHO05D006585 6.5e-07 57.4 38 68.4
EL10Ac4g08413 Beta vulgaris HOM05D002452 ORTHO05D006585 8.5e-07 57.0 38 63.2
AUR62039507 Chenopodium quinoa HOM05D002452 ORTHO05D006585 8.5e-07 57.0 35 68.6
Medtr8g054450 Medicago truncatula HOM05D002452 ORTHO05D006585 8.5e-07 57.0 38 68.4
arahy.Tifrunner.gnm1.ann1.4IG6PJ Arachis hypogaea HOM05D002452 ORTHO05D006585 1.1e-06 56.6 38 68.4
arahy.Tifrunner.gnm1.ann1.EQXZ2A Arachis hypogaea HOM05D002452 ORTHO05D006585 1.1e-06 56.6 38 68.4
VMungo1127G1496 Vigna mungo HOM05D002452 ORTHO05D006585 1.4e-06 56.2 38 65.8
AUR62019642 Chenopodium quinoa HOM05D002452 ORTHO05D006585 1.9e-06 55.8 35 68.6
SEGI_16031 Sequoiadendron giganteum HOM05D002452 ORTHO05D006585 1.9e-06 55.8 38 68.4
Hund10438 Selenicereus undatus HOM05D002452 ORTHO05D006585 2.5e-06 55.5 38 63.2
Psat4g140640 Pisum sativum HOM05D002452 ORTHO05D006585 3.2e-06 55.1 38 63.2
TPR.G16476 Trifolium pratense HOM05D002452 ORTHO05D006585 3.2e-06 55.1 37 67.6


User provided reference genes

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