Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 8.4e-108 393.7 193 100.0
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.2e-37 160.6 188 52.7
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 3.0e-33 146.0 194 49.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 3.0e-33 146.0 198 50.0
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 5.2e-33 145.2 191 48.2
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.6e-32 142.9 188 47.3
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.3e-31 140.6 199 48.2
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.7e-31 140.2 194 45.9
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.2e-31 139.8 192 45.8
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 3.7e-31 139.0 195 45.1
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.3e-31 138.3 193 42.5
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.3e-31 138.3 193 42.5
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 8.3e-31 137.9 200 44.5
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 8.3e-31 137.9 189 43.4
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.1e-30 137.5 192 45.8
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.4e-30 137.1 193 46.6
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.2e-30 136.0 188 44.7
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.2e-30 136.0 189 45.0
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 3.2e-30 136.0 187 46.5
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 3.2e-30 136.0 199 47.7
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 4.1e-30 135.6 196 48.0
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 5.4e-30 135.2 197 46.2
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.4e-30 135.2 197 46.2
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.4e-30 135.2 197 46.2
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.4e-30 135.2 197 46.2
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.0e-30 134.8 199 48.2
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.0e-30 134.8 189 44.4
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 7.0e-30 134.8 195 48.2
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 9.2e-30 134.4 188 45.2
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-29 134.0 197 46.2
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-29 134.0 197 46.2
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.2e-29 134.0 189 45.0
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.6e-29 133.7 190 45.3
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.0e-29 133.3 199 47.7
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.0e-29 133.3 199 46.2
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.0e-29 133.3 196 45.9
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.7e-29 132.9 201 45.3
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.7e-29 132.9 189 48.7
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 3.5e-29 132.5 189 46.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.6e-29 132.1 189 42.9
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 4.6e-29 132.1 199 44.7
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 5.9e-29 131.7 199 45.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 5.9e-29 131.7 212 44.8
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 7.8e-29 131.3 185 43.2
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.3e-28 130.6 189 43.4
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.3e-28 130.6 210 44.8
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 2.3e-28 129.8 187 46.5
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.9e-28 129.4 191 43.5
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 5.0e-28 128.6 191 42.4
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 6.6e-28 128.3 206 45.1
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 6.6e-28 128.3 193 45.1
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 8.6e-28 127.9 210 43.8
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.1e-27 127.5 192 44.8
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.9e-27 126.7 207 42.5
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.9e-27 126.7 188 45.7
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 4.3e-27 125.6 188 45.7
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 4.3e-27 125.6 187 45.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 7.3e-27 124.8 190 41.6
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 9.5e-27 124.4 189 42.3
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 9.5e-27 124.4 200 43.0
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 9.5e-27 124.4 185 45.4
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.6e-26 123.6 210 42.9
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.6e-26 123.6 190 42.6
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.6e-26 123.6 195 43.1
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.8e-26 122.9 208 43.8
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.8e-26 122.9 196 42.3
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.8e-26 122.9 194 42.8
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.6e-26 122.5 194 44.3
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.7e-26 122.1 195 45.1
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 6.1e-26 121.7 194 40.7
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 6.1e-26 121.7 195 42.1
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 6.1e-26 121.7 188 41.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 8.0e-26 121.3 185 40.5
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 8.0e-26 121.3 185 44.3
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.0e-25 120.9 193 44.0
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.1e-25 119.4 189 42.9
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.1e-25 119.4 177 45.8
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 3.1e-25 119.4 191 43.5
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 3.1e-25 119.4 194 44.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.0e-25 119.0 188 42.0
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 4.0e-25 119.0 197 44.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 4.0e-25 119.0 203 43.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.2e-25 118.6 171 48.0
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 5.2e-25 118.6 200 43.5
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 8.9e-25 117.9 189 42.9
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.2e-24 117.5 188 44.1
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-24 116.3 187 42.2
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.4e-24 115.9 195 42.1
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 7.5e-24 114.8 185 42.7
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 9.8e-24 114.4 186 41.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 9.8e-24 114.4 185 42.7
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 9.8e-24 114.4 204 42.6
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.3e-23 114.0 197 39.6
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.3e-23 114.0 197 41.1
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.2e-23 113.2 185 42.7
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.2e-23 113.2 185 40.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 2.2e-23 113.2 197 41.6
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 3.7e-23 112.5 210 42.9
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 4.9e-23 112.1 197 42.6
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.1e-22 110.9 200 40.0
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-22 110.5 185 40.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.4e-22 110.5 151 47.7
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.9e-22 110.2 171 45.6
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.9e-22 110.2 155 47.1
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.9e-22 110.2 184 40.2
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.9e-22 110.2 194 40.2
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.4e-22 109.8 183 40.4
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 2.4e-22 109.8 208 39.4
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.2e-22 109.4 192 41.7
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 3.2e-22 109.4 176 42.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 3.2e-22 109.4 207 40.1
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 3.2e-22 109.4 190 37.9
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 3.2e-22 109.4 187 42.2
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 4.1e-22 109.0 183 40.4
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 4.1e-22 109.0 190 42.1
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 7.0e-22 108.2 182 39.0
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 9.2e-22 107.8 185 38.9
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 9.2e-22 107.8 191 38.7
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 9.2e-22 107.8 186 40.9
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.2e-22 107.8 196 40.8
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 9.2e-22 107.8 198 39.9
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-21 107.5 187 40.6
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.2e-21 107.5 185 40.5
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 2.0e-21 106.7 192 40.6
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 2.0e-21 106.7 195 41.0
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.7e-21 106.3 194 40.7
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.7e-21 106.3 193 43.5
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 3.5e-21 105.9 187 40.1
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.5e-21 105.9 157 44.6
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 3.5e-21 105.9 193 40.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.6e-21 105.5 191 40.8
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 4.6e-21 105.5 218 40.4
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-20 104.4 193 43.0
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.0e-20 104.4 193 43.0
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.3e-20 103.2 140 46.4
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.0e-20 102.8 203 40.9
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 3.9e-20 102.4 193 39.4
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 3.9e-20 102.4 193 39.4
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 3.9e-20 102.4 184 39.1
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.0e-20 102.1 192 40.1
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 5.0e-20 102.1 194 39.2
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 6.6e-20 101.7 185 41.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 8.6e-20 101.3 188 39.4
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.5e-19 100.5 188 41.0
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.9e-19 100.1 191 38.2
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-19 100.1 183 38.3
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.3e-19 99.4 172 41.3
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.3e-19 99.0 192 36.5
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 5.6e-19 98.6 194 36.1
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 5.6e-19 98.6 158 44.9
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.6e-19 98.6 193 39.9
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.6e-19 98.6 193 39.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 7.3e-19 98.2 202 40.6
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-18 97.4 183 37.7
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.1e-18 96.7 140 44.3
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 2.8e-18 96.3 186 40.3
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.7e-18 95.5 187 40.1
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.8e-17 93.6 267 33.0
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.3e-17 93.2 145 44.8
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.2e-16 90.9 193 42.0
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.5e-16 90.5 129 44.2
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 4.4e-16 89.0 126 45.2
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 9.2e-14 81.3 125 43.2
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.6e-13 80.5 200 34.0
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.1e-13 80.1 194 37.1
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 2.7e-13 79.7 146 38.4
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 3.0e-12 76.3 144 38.2
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.1e-11 74.3 194 35.1
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.9e-11 73.6 70 58.6
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 2.5e-11 73.2 134 38.8
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 5.6e-11 72.0 192 31.8
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.6e-10 69.3 69 59.4
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-09 67.8 204 31.4
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.4e-09 67.4 192 31.2
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.1e-09 66.2 192 30.7
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 6.8e-09 65.1 192 30.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-08 64.3 192 30.7
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 4.4e-08 62.4 75 50.7
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.3e-07 60.8 205 31.2
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.7e-07 60.5 72 48.6
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.9e-06 57.0 73 39.7


User provided reference genes

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