Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 3.6e-239 831.2 439 100.0
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 1.2e-69 268.1 462 42.6
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 1.3e-68 264.6 457 42.7
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.4e-65 254.6 461 41.4
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 1.2e-64 251.5 457 41.1
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 7.6e-64 248.8 458 41.9
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 9.9e-64 248.4 460 42.0
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 9.9e-64 248.4 458 40.8
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 6.4e-63 245.7 453 42.2
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 2.7e-61 240.4 460 41.3
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 4.6e-61 239.6 473 41.0
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 1.7e-60 237.7 477 39.6
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 2.5e-59 233.8 508 39.8
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 4.3e-59 233.0 458 39.7
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 7.3e-59 232.3 461 39.0
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.1e-58 230.7 515 38.8
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 6.2e-58 229.2 532 36.3
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 2.4e-57 227.3 457 37.6
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 2.9e-55 220.3 559 34.3
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 2.9e-55 220.3 484 37.4
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 2.4e-54 217.2 483 38.7
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 3.2e-54 216.9 466 39.5
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 3.2e-54 216.9 458 38.2
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 2.1e-53 214.2 514 37.2
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 2.7e-53 213.8 457 40.9
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 1.3e-52 211.5 562 34.3
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 3.9e-52 209.9 477 38.6
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.9e-51 207.6 464 37.5
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 3.3e-51 206.8 495 36.8
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 4.3e-51 206.5 471 38.0
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 5.6e-51 206.1 511 37.2
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 5.6e-51 206.1 515 37.5
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.3e-50 204.9 477 38.2
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.8e-50 203.8 508 37.4
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.8e-50 203.8 512 36.3
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 8.1e-50 202.2 473 36.4
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.4e-49 201.4 512 35.9
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.8e-49 201.1 468 36.3
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 4.0e-49 199.9 518 34.4
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 5.3e-49 199.5 492 34.3
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 5.3e-49 199.5 520 34.0
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 6.9e-49 199.1 514 34.6
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 9.0e-49 198.7 530 33.0
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 1.2e-48 198.4 493 34.1
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.4e-48 196.8 529 33.3
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 3.4e-48 196.8 522 32.6
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 4.5e-48 196.4 523 33.1
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.0e-47 195.3 455 38.0
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.7e-47 194.5 474 36.7
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 2.2e-47 194.1 511 34.8
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 4.9e-47 193.0 505 36.0
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 2.5e-46 190.7 540 34.8
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 7.1e-46 189.1 518 33.4
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 1.6e-45 188.0 469 35.6
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 3.5e-45 186.8 473 34.7
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 4.6e-45 186.4 469 37.3
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 6.0e-45 186.0 521 34.5
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 7.9e-45 185.7 510 32.4
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 1.8e-44 184.5 464 35.3
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 3.0e-44 183.7 455 35.4
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.3e-43 179.9 529 31.2
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 9.6e-43 178.7 479 32.8
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 6.2e-42 176.0 533 32.1
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.8e-41 174.5 506 32.4
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 5.3e-41 172.9 148 63.5
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 2.0e-40 171.0 130 71.5
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 3.4e-40 170.2 510 32.7
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 4.5e-40 169.9 604 31.5
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.0e-39 168.7 515 32.8
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 6.5e-39 166.0 515 31.7
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 3.2e-38 163.7 521 32.8
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 6.1e-37 159.5 577 30.3
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 7.9e-37 159.1 534 33.5
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 7.9e-37 159.1 404 36.6
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 7.9e-37 159.1 441 31.3
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 1.1e-35 155.2 520 29.6
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.9e-35 154.5 401 35.7
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.3e-34 151.8 134 64.2
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.3e-34 151.8 536 31.0
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 3.7e-34 150.2 476 32.1
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 8.2e-34 149.1 175 54.3
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 2.4e-33 147.5 468 33.1
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 5.3e-33 146.4 144 56.9
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 6.9e-33 146.0 472 30.7
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 2.0e-32 144.4 495 31.7
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 2.6e-32 144.1 507 30.0
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 5.9e-32 142.9 103 71.8
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.0e-31 142.1 526 31.7
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 1.3e-31 141.7 490 32.4
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 2.2e-31 141.0 546 30.2
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 6.5e-31 139.4 467 33.0
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 1.4e-30 138.3 507 29.4
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 2.5e-30 137.5 453 32.9
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 4.2e-30 136.7 473 31.9
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 4.2e-30 136.7 473 31.9
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 7.2e-30 136.0 117 65.0
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 1.2e-29 135.2 117 61.5
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.8e-28 131.3 528 30.5
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 2.3e-28 131.0 512 30.1
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 3.9e-28 130.2 534 29.4
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 1.7e-26 124.8 541 27.9
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 4.8e-26 123.2 529 29.7
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 2.0e-24 117.9 105 61.0
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 2.6e-24 117.5 123 52.0
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.0e-23 115.5 444 30.2
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 8.5e-23 112.5 417 29.5
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 4.7e-21 106.7 411 29.9
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 1.0e-20 105.5 437 29.3
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 7.4e-19 99.4 447 28.6
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 6.3e-18 96.3 251 31.9
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 3.1e-17 94.0 316 30.1
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 2.0e-16 91.3 262 30.5
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 4.5e-16 90.1 400 27.8
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 7.7e-16 89.4 271 31.0
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 3.8e-15 87.0 383 28.5
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 1.0e-12 79.0 100 47.0
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 1.5e-11 75.1 296 30.1
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.5e-11 75.1 83 47.0
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 2.0e-11 74.7 155 32.3
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 2.6e-11 74.3 237 29.5
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 1.3e-10 72.0 82 45.1
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 1.7e-10 71.6 78 44.9
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 4.8e-10 70.1 95 36.8
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 4.8e-10 70.1 81 42.0
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 6.3e-10 69.7 219 29.7
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 1.4e-09 68.6 193 30.1
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.4e-09 68.6 75 44.0
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 4.1e-09 67.0 79 46.8
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 4.1e-09 67.0 75 44.0
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 5.3e-09 66.6 61 49.2
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 1.6e-08 65.1 81 40.7
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 1.6e-08 65.1 81 38.3
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 2.0e-08 64.7 81 43.2
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 2.7e-08 64.3 50 56.0
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 2.7e-08 64.3 90 34.4
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 4.5e-08 63.5 179 27.9
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 4.5e-08 63.5 83 41.0
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 4.5e-08 63.5 70 44.3
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 5.9e-08 63.2 79 43.0
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 5.9e-08 63.2 55 52.7
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 7.7e-08 62.8 54 50.0
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 1.0e-07 62.4 81 38.3
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 1.0e-07 62.4 75 42.7
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.3e-07 62.0 82 37.8
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.7e-07 61.6 54 51.9
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.7e-07 61.6 83 39.8
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 1.7e-07 61.6 75 41.3
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 2.2e-07 61.2 254 25.6
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 2.2e-07 61.2 67 43.3
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 2.9e-07 60.8 45 73.3
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.9e-07 60.8 84 34.5
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.9e-07 60.8 209 28.2
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 3.8e-07 60.5 68 42.6
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 3.8e-07 60.5 170 28.8
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 3.8e-07 60.5 163 27.0
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 5.0e-07 60.1 72 43.1
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 6.5e-07 59.7 88 37.5
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 6.5e-07 59.7 54 51.9
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 6.5e-07 59.7 216 26.4
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 8.5e-07 59.3 79 38.0
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 8.5e-07 59.3 81 35.8
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 8.5e-07 59.3 67 40.3
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 1.5e-06 58.5 82 39.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 1.5e-06 58.5 82 39.0
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 1.9e-06 58.2 60 40.0
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.9e-06 58.2 80 37.5
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 2.5e-06 57.8 94 36.2
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 3.2e-06 57.4 76 42.1
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 3.2e-06 57.4 60 43.3
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 4.2e-06 57.0 260 24.6
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 5.5e-06 56.6 172 25.6
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 5.5e-06 56.6 55 45.5
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 7.2e-06 56.2 82 40.2
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 7.2e-06 56.2 55 47.3
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 7.2e-06 56.2 156 27.6
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 9.4e-06 55.8 177 23.7
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 9.4e-06 55.8 72 43.1
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 9.4e-06 55.8 81 40.7


User provided reference genes

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