Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 2.3e-201 705.3 346 100.0
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 1.2e-125 453.8 348 64.1
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 1.6e-125 453.4 347 64.0
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 7.9e-125 451.1 348 66.1
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 5.1e-124 448.4 350 64.6
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.6e-123 446.0 347 64.3
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 4.8e-122 441.8 349 62.8
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 3.1e-121 439.1 358 62.3
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 1.0e-119 434.1 326 64.7
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 1.3e-119 433.7 332 64.2
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 3.8e-119 432.2 328 65.2
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 6.5e-119 431.4 347 63.1
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 1.9e-118 429.9 347 63.1
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 3.6e-117 425.6 345 60.6
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.0e-116 424.1 310 64.8
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 2.0e-115 419.9 344 60.2
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.3e-114 417.2 344 61.6
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 2.2e-114 416.4 310 65.5
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 3.7e-114 415.6 344 61.0
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 1.2e-112 410.6 347 59.1
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 4.5e-112 408.7 327 62.7
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 5.0e-111 405.2 319 61.8
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.5e-110 403.7 312 61.5
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.5e-110 403.7 350 57.1
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 2.5e-110 402.9 347 58.8
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 4.2e-110 402.1 333 58.6
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 3.6e-109 399.1 314 61.8
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 8.0e-109 397.9 395 53.2
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.8e-108 396.7 346 57.8
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 6.7e-108 394.8 316 60.1
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 9.7e-107 391.0 357 58.8
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 9.7e-107 391.0 397 52.9
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 9.7e-107 391.0 397 52.9
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 2.8e-106 389.4 330 59.4
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 6.3e-106 388.3 317 60.9
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 8.2e-106 387.9 393 53.4
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.4e-105 387.1 333 58.9
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.4e-105 386.3 247 73.7
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 3.1e-105 386.0 404 53.7
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 5.3e-105 385.2 287 64.1
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 2.0e-104 383.3 350 56.3
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 2.9e-103 379.4 346 58.7
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.9e-103 379.4 275 65.8
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 3.8e-103 379.0 354 57.1
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.7e-101 372.9 329 56.5
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 3.6e-101 372.5 348 55.5
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.0e-100 370.9 345 56.5
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 2.3e-100 369.8 408 50.5
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 3.0e-100 369.4 370 54.3
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 4.0e-100 369.0 312 58.7
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 6.8e-100 368.2 320 56.9
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 8.8e-100 367.9 372 52.7
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 5.7e-99 365.2 401 48.9
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 7.0e-97 358.2 326 54.9
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 5.9e-96 355.1 317 59.0
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 1.3e-95 354.0 320 56.2
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.1e-94 350.9 299 58.5
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 1.1e-94 350.9 330 54.5
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 1.1e-94 350.9 330 54.5
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.1e-94 350.9 307 57.7
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.5e-94 350.5 316 54.4
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.2e-94 349.0 310 55.8
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 5.5e-94 348.6 318 56.9
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.2e-93 347.4 315 55.6
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 1.6e-93 347.1 315 54.6
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 2.8e-93 346.3 318 54.7
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 1.8e-92 343.6 318 53.1
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 1.8e-92 343.6 329 55.0
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 3.0e-92 342.8 322 53.4
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 8.9e-92 341.3 280 59.6
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 2.0e-91 340.1 312 55.4
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 2.0e-91 340.1 315 53.7
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 3.4e-91 339.3 277 58.1
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 2.2e-90 336.7 329 53.2
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 4.9e-90 335.5 344 53.2
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 4.1e-89 332.4 326 52.5
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 2.7e-88 329.7 305 53.4
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 7.8e-88 328.2 326 51.5
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.3e-86 322.4 288 55.6
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 9.5e-86 321.2 217 71.9
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 1.6e-85 320.5 337 49.0
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.8e-85 319.7 310 52.3
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.8e-85 319.7 310 52.3
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.7e-82 310.5 275 55.3
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 3.2e-81 306.2 284 54.9
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 7.0e-81 305.1 210 72.9
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.7e-80 303.1 240 61.2
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 3.3e-78 296.2 306 49.7
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 4.3e-78 295.8 228 61.4
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.6e-77 293.9 274 54.7
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 2.1e-77 293.5 310 49.4
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 4.0e-76 289.3 312 50.0
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.2e-75 287.7 238 59.2
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 7.5e-75 285.0 329 48.9
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.4e-73 280.8 356 46.6
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 3.2e-73 279.6 332 43.7
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 5.4e-73 278.9 341 46.9
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 2.1e-72 276.9 227 59.0
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 3.0e-71 273.1 229 59.4
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 2.5e-70 270.0 228 58.8
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 5.6e-70 268.9 225 58.7
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 5.2e-68 262.3 240 54.2
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.5e-67 260.8 319 47.6
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 4.4e-67 259.2 215 58.6
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 8.3e-66 255.0 235 53.6
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 4.1e-65 252.7 315 46.0
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.7e-63 247.3 322 42.5
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.7e-63 247.3 325 42.8
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 1.1e-60 238.0 161 69.6
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 4.2e-57 226.1 150 74.7
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 2.1e-56 223.8 113 99.1
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 7.8e-56 221.9 178 59.0
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 2.3e-55 220.3 198 53.5
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 8.7e-55 218.4 261 45.6
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.4e-52 211.1 319 39.8
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 4.4e-51 206.1 161 58.4
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 9.6e-46 188.3 220 46.4
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 3.6e-45 186.4 179 53.6
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 9.0e-44 181.8 118 69.5
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 1.8e-39 167.5 158 55.1
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.1e-36 158.3 139 57.6
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 1.1e-33 148.3 101 69.3
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.2e-33 146.7 84 81.0
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 1.3e-29 134.8 108 63.9
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 4.5e-27 126.3 157 43.3
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 5.9e-19 99.4 100 49.0
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 5.1e-15 86.3 79 50.6
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 1.1e-12 78.6 73 60.3
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 1.8e-12 77.8 76 61.8
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 4.1e-12 76.6 68 50.0
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.2e-11 75.1 56 69.6
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.5e-11 74.7 54 70.4
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 2.6e-11 73.9 54 63.0
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 4.5e-11 73.2 107 40.2
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.1e-09 68.6 87 40.2
FAN19G0239 Fragaria x ananassa HOM05D006152 ORTHO05D045810 5.1e-07 59.7 67 53.7


User provided reference genes

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