Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 1.9e-170 602.4 307 100.0
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 6.8e-112 407.9 376 58.8
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 7.6e-111 404.4 376 56.4
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 4.6e-108 395.2 306 67.0
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 3.9e-107 392.1 390 55.6
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 5.2e-104 381.7 380 56.1
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 1.2e-103 380.6 375 56.3
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 3.4e-103 379.0 376 56.6
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 4.4e-103 378.6 363 58.1
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 2.2e-102 376.3 385 56.4
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 2.9e-102 375.9 370 55.1
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 8.4e-102 374.4 358 59.2
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 5.4e-101 371.7 382 56.0
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 5.4e-101 371.7 380 55.0
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 7.8e-100 367.9 388 54.6
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 7.8e-100 367.9 357 58.3
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 1.3e-99 367.1 374 55.1
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 1.3e-99 367.1 377 56.5
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 2.3e-99 366.3 336 60.4
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 2.3e-99 366.3 378 56.9
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 5.1e-99 365.2 368 56.0
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 6.6e-99 364.8 388 54.4
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.1e-98 364.0 377 55.2
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 1.1e-98 364.0 384 54.2
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 7.3e-98 361.3 362 58.0
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.3e-97 360.5 358 56.7
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 2.8e-97 359.4 354 55.9
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 3.6e-97 359.0 388 52.8
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 6.2e-97 358.2 370 52.7
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 8.1e-97 357.8 380 53.7
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.4e-96 357.1 377 52.8
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 3.1e-96 355.9 356 55.3
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 3.1e-96 355.9 358 54.5
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 4.0e-96 355.5 376 54.3
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 1.2e-95 354.0 363 54.8
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 2.0e-95 353.2 364 56.3
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 2.6e-95 352.8 356 54.8
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 2.6e-95 352.8 355 56.6
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 3.4e-95 352.4 413 50.1
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 2.9e-94 349.4 356 55.1
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 1.4e-93 347.1 413 50.8
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.9e-93 346.7 387 52.2
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 3.2e-93 345.9 381 54.1
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 4.2e-93 345.5 380 53.4
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 9.3e-93 344.4 368 54.3
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 2.1e-92 343.2 380 53.2
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 1.3e-91 340.5 331 58.3
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 2.3e-91 339.7 357 54.6
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 6.6e-91 338.2 358 55.0
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 8.7e-91 337.8 363 53.2
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 1.9e-90 336.7 369 51.8
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 3.3e-90 335.9 379 51.5
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 3.3e-90 335.9 357 54.1
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 4.3e-90 335.5 361 54.6
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 7.4e-90 334.7 357 54.1
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 9.6e-90 334.3 361 54.0
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 1.6e-89 333.6 379 52.0
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 4.8e-89 332.0 384 51.0
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 8.1e-89 331.3 356 53.4
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 8.1e-89 331.3 327 56.9
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 8.1e-89 331.3 362 52.8
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 1.4e-88 330.5 392 49.7
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 1.8e-88 330.1 327 57.5
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 2.4e-88 329.7 358 51.4
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 2.4e-88 329.7 316 55.1
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 5.3e-88 328.6 327 56.9
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 6.9e-88 328.2 357 52.7
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 9.0e-88 327.8 362 53.0
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 1.2e-87 327.4 323 57.6
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 2.0e-87 326.6 379 50.4
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 2.6e-87 326.2 373 50.4
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 4.5e-87 325.5 372 51.3
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 4.5e-87 325.5 365 52.9
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 5.8e-87 325.1 385 50.4
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 3.8e-86 322.4 365 51.0
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 1.9e-85 320.1 398 48.7
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 2.4e-85 319.7 371 49.6
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 7.1e-85 318.2 357 53.2
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 9.3e-85 317.8 322 55.0
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 1.6e-84 317.0 373 51.2
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 4.6e-84 315.5 382 51.0
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 7.9e-84 314.7 359 49.3
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 5.6e-82 308.5 358 50.0
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 7.4e-82 308.1 311 55.6
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 9.6e-82 307.8 369 49.9
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 2.1e-81 306.6 319 51.4
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 3.7e-81 305.8 369 47.4
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 3.7e-81 305.8 359 51.3
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 6.2e-81 305.1 322 53.7
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 8.1e-81 304.7 370 47.6
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 8.1e-81 304.7 322 53.7
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 8.1e-81 304.7 322 53.7
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 3.1e-80 302.8 325 54.5
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 4.0e-80 302.4 322 53.4
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 2.0e-79 300.1 294 57.1
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 7.6e-79 298.1 292 57.2
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 3.8e-78 295.8 331 50.2
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 4.9e-78 295.4 191 75.9
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 6.5e-78 295.0 319 53.6
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 1.2e-76 290.8 325 52.3
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 3.5e-76 289.3 427 44.3
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 4.6e-76 288.9 284 57.4
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 1.9e-74 283.5 315 53.0
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 5.7e-74 282.0 184 78.3
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 3.4e-71 272.7 291 51.5
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 2.2e-70 270.0 263 57.4
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 9.3e-69 264.6 196 67.3
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 5.7e-66 255.4 190 68.4
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 1.2e-63 247.7 184 68.5
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 1.3e-62 244.2 253 54.5
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.7e-62 243.8 318 44.7
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.7e-60 236.5 203 59.6
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 7.9e-60 235.0 241 54.8
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 3.0e-59 233.0 307 48.9
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 3.9e-59 232.6 304 45.1
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 5.1e-59 232.3 333 42.3
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 3.3e-58 229.6 361 42.1
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 6.3e-57 225.3 338 40.2
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 6.5e-54 215.3 386 39.4
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 3.0e-51 206.5 291 43.3
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 8.8e-51 204.9 208 52.4
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 5.3e-48 195.7 242 47.9
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 1.5e-45 187.6 123 78.0
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 3.2e-37 159.8 102 79.4
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 9.4e-37 158.3 135 59.3
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 1.6e-36 157.5 196 48.0
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 2.1e-36 157.1 247 42.1
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 4.4e-34 149.4 135 57.8
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 3.1e-32 143.3 334 31.1
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 5.4e-32 142.5 358 27.9
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 2.2e-30 137.1 142 54.2
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 2.1e-28 130.6 87 72.4
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.0e-27 128.3 175 44.0
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 2.6e-26 123.6 358 30.7
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 1.1e-24 118.2 77 74.0
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 7.0e-24 115.5 86 62.8
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 7.0e-24 115.5 254 31.1
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.2e-23 114.8 93 64.5
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 8.6e-22 108.6 282 27.3
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 5.6e-21 105.9 70 72.9
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 6.1e-20 102.4 72 69.4
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.5e-18 97.8 94 58.5
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 1.8e-16 90.9 131 42.7
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 1.6e-15 87.8 56 71.4
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 5.9e-15 85.9 363 25.3
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 5.0e-14 82.8 111 39.6
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.9e-13 80.9 49 75.5
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 9.8e-10 68.6 42 73.8
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 1.6e-07 61.2 74 50.0


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