Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 2.0e-80 302.4 152 100.0
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 1.3e-71 273.1 157 91.7
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 4.6e-53 211.5 152 70.4
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 5.1e-52 208.0 152 69.7
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.1e-51 206.8 152 69.7
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 3.3e-51 205.3 152 69.1
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 7.4e-51 204.1 146 68.5
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 9.7e-51 203.8 152 68.4
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 1.7e-50 203.0 152 68.4
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 2.2e-50 202.6 151 68.2
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 3.7e-50 201.8 152 68.4
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 4.8e-50 201.4 152 66.4
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 1.1e-49 200.3 152 65.8
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 1.8e-49 199.5 152 65.8
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 2.4e-49 199.1 152 67.8
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 2.4e-49 199.1 152 68.4
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 3.1e-49 198.7 152 67.1
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 3.1e-49 198.7 153 66.0
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 4.1e-49 198.4 152 65.1
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 4.1e-49 198.4 153 65.4
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 4.1e-49 198.4 152 65.1
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 5.3e-49 198.0 151 66.2
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 9.1e-49 197.2 152 65.8
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 1.2e-48 196.8 152 65.1
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 2.0e-48 196.1 151 65.6
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 3.4e-48 195.3 152 64.5
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 4.5e-48 194.9 151 65.6
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 4.5e-48 194.9 152 65.8
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 5.9e-48 194.5 143 67.8
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 5.9e-48 194.5 143 69.2
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 1.0e-47 193.7 143 67.8
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 1.3e-47 193.4 152 63.2
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 1.3e-47 193.4 152 63.2
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 1.7e-47 193.0 144 66.7
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 2.9e-47 192.2 152 64.5
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 3.8e-47 191.8 144 66.0
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 3.8e-47 191.8 152 62.5
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 5.0e-47 191.4 152 62.5
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 6.5e-47 191.0 141 67.4
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 6.5e-47 191.0 152 65.1
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 1.1e-46 190.3 141 66.7
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 1.1e-46 190.3 152 63.2
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 1.1e-46 190.3 152 63.2
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 1.9e-46 189.5 141 67.4
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 4.2e-46 188.3 143 63.6
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 1.6e-45 186.4 142 63.4
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 1.6e-45 186.4 141 66.0
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 2.1e-45 186.0 146 63.0
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 3.6e-45 185.3 152 61.2
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 4.7e-45 184.9 143 64.3
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 6.1e-45 184.5 143 64.3
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 1.0e-44 183.7 142 62.7
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 1.8e-44 183.0 135 65.2
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 1.8e-44 183.0 143 63.6
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 5.2e-44 181.4 151 60.9
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 5.2e-44 181.4 141 63.1
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 1.5e-43 179.9 151 62.3
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 3.3e-43 178.7 152 63.8
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 4.4e-43 178.3 159 58.5
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 7.4e-43 177.6 144 63.9
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 1.3e-42 176.8 144 61.8
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 2.2e-42 176.0 141 61.7
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 2.2e-42 176.0 142 59.9
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 2.2e-42 176.0 142 59.9
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 2.2e-42 176.0 143 60.8
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 4.8e-42 174.9 147 62.6
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 6.3e-42 174.5 161 58.4
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 4.1e-41 171.8 141 59.6
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 4.1e-41 171.8 130 65.4
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 5.3e-41 171.4 143 62.2
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 1.6e-40 169.9 146 57.5
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 4.5e-40 168.3 122 70.5
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 5.9e-40 167.9 130 65.4
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 7.7e-40 167.5 143 60.8
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 2.9e-39 165.6 191 50.8
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 8.5e-39 164.1 140 57.9
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 8.5e-39 164.1 152 55.3
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 3.2e-38 162.2 111 70.3
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 5.5e-38 161.4 140 60.0
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 4.7e-37 158.3 152 53.9
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 1.0e-36 157.1 109 67.0
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 2.3e-36 156.0 132 64.4
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 1.2e-35 153.7 110 65.5
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 2.0e-35 152.9 143 53.8
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 3.3e-35 152.1 143 53.8
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 3.3e-35 152.1 143 53.8
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 4.4e-35 151.8 143 53.8
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 7.5e-35 151.0 143 53.1
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 7.5e-35 151.0 143 53.1
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 7.5e-35 151.0 143 53.1
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 7.5e-35 151.0 143 53.1
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 1.3e-34 150.2 153 55.6
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 2.2e-34 149.4 153 52.3
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 4.8e-34 148.3 153 51.6
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 1.1e-33 147.1 143 51.0
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 2.4e-33 146.0 136 53.7
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 2.4e-33 146.0 142 53.5
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 7.0e-33 144.4 143 51.0
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 1.6e-32 143.3 140 52.9
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 7.7e-32 141.0 124 60.5
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 1.0e-31 140.6 137 50.4
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 1.7e-31 139.8 156 49.4
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 1.7e-31 139.8 133 51.9
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 3.8e-31 138.7 128 56.2
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 5.0e-31 138.3 114 63.2
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.1e-30 137.1 125 55.2
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 2.1e-29 132.9 141 49.6
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 2.7e-29 132.5 139 46.8
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 3.0e-28 129.0 111 59.5
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 2.9e-23 112.5 81 64.2
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 1.8e-20 103.2 65 72.3
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 3.0e-20 102.4 143 42.7
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 5.7e-19 98.2 76 67.1
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 9.8e-19 97.4 147 44.9
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 7.3e-14 81.3 91 48.4
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 6.1e-13 78.2 75 48.0
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 1.4e-12 77.0 139 37.4
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 2.2e-10 69.7 56 60.7
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 5.0e-07 58.5 85 36.5


User provided reference genes

Program Settings