Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 8.8e-78 293.5 144 100.0
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 9.7e-77 290.0 144 97.2
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 3.7e-76 288.1 144 97.2
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 8.2e-76 287.0 144 96.5
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 1.8e-75 285.8 144 95.8
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 1.8e-75 285.8 144 95.8
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 1.8e-75 285.8 144 95.8
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 3.1e-75 285.0 144 95.1
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 5.3e-75 284.3 144 95.1
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 95.1
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 95.1
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 95.1
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 95.1
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 1.2e-74 283.1 144 95.1
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 1.2e-74 283.1 144 95.1
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 94.4
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 93.8
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 94.4
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 95.1
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 94.4
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 93.8
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 94.4
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 3.5e-74 281.6 144 94.4
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 3.5e-74 281.6 143 93.7
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 94.4
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 95.1
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 4.5e-74 281.2 143 95.1
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 93.1
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 93.8
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 93.8
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 7.7e-74 280.4 142 94.4
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 7.7e-74 280.4 142 94.4
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 93.1
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 7.7e-74 280.4 141 94.3
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.8
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.8
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.1
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.1
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 1.7e-73 279.3 142 92.3
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.7e-73 279.3 142 93.7
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.8
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 91.7
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 91.7
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 93.1
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 92.4
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 93.1
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 91.7
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 91.7
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 93.1
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 93.1
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 91.7
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 91.0
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 91.0
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 91.7
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 90.3
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 2.5e-72 275.4 142 92.3
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 2.5e-72 275.4 142 92.3
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 2.5e-72 275.4 142 92.3
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 90.3
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 2.5e-72 275.4 142 92.3
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 3.2e-72 275.0 141 92.2
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 90.3
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 92.4
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 5.5e-72 274.2 141 92.2
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 90.3
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 1.6e-71 272.7 142 91.5
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 1.6e-71 272.7 144 89.6
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 4.7e-71 271.2 144 88.9
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 4.7e-71 271.2 144 89.6
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 2.3e-70 268.9 142 90.1
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 5.2e-70 267.7 142 89.4
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.2e-69 266.5 154 87.0
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 1.5e-69 266.2 138 89.1
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 5.7e-69 264.2 170 77.6
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 9.8e-69 263.5 138 89.1
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 9.8e-69 263.5 130 96.2
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 9.8e-69 263.5 167 78.4
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 2.2e-68 262.3 138 88.4
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.8e-68 261.9 143 87.4
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 4.8e-68 261.2 142 86.6
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 1.1e-67 260.0 141 85.8
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 9.1e-67 256.9 140 86.4
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 86.4
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 86.4
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 1.2e-66 256.5 142 83.8
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 87.1
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.6e-66 256.1 140 85.0
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 2.0e-66 255.8 140 85.7
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 4.5e-66 254.6 140 85.0
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 4.5e-66 254.6 137 86.9
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 5.9e-66 254.2 138 85.5
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 7.7e-66 253.8 203 66.5
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 85.0
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 5.0e-65 251.1 208 65.4
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.1e-64 250.0 140 82.9
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 82.1
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 2.5e-64 248.8 142 81.7
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.3e-64 248.4 140 83.6
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 7.2e-64 247.3 140 82.1
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 7.2e-64 247.3 140 82.1
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 2.1e-63 245.7 140 84.3
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 2.1e-63 245.7 140 84.3
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 2.1e-63 245.7 140 84.3
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 2.1e-63 245.7 140 84.3
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 2.8e-63 245.4 140 80.7
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 2.8e-63 245.4 140 80.7
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 8.0e-63 243.8 137 84.7
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.0e-62 243.4 156 77.6
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 4.0e-62 241.5 168 71.4
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 4.0e-62 241.5 138 81.2
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 8.3e-60 233.8 142 80.3
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 2.7e-58 228.8 129 82.9
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.0e-57 226.9 144 70.8
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.3e-57 226.5 140 78.6
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 5.2e-54 214.5 142 67.6
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 1.6e-50 203.0 138 63.8
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.6e-50 203.0 117 80.3
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.0e-50 202.6 114 82.5
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 2.0e-50 202.6 160 65.0
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 2.3e-49 199.1 136 63.2
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 1.5e-48 196.4 99 93.9
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 5.6e-48 194.5 120 80.0
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 1.1e-46 190.3 97 90.7
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 7.5e-45 184.1 118 78.0
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 2.5e-32 142.5 74 94.6
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 2.0e-29 132.9 148 49.3
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 4.4e-29 131.7 74 86.5
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 7.6e-29 131.0 74 85.1
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.8e-28 128.6 74 83.8
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 6.0e-26 121.3 140 49.3
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 5.1e-17 91.7 43 93.0
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 4.5e-13 78.6 157 32.5
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.9e-12 75.9 117 38.5
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 6.4e-12 74.7 53 66.0
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 9.3e-11 70.9 44 75.0
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 7.4e-08 61.2 36 72.2
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 3.7e-07 58.9 132 28.8
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 5.3e-06 55.1 83 38.6


User provided reference genes

Program Settings