Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 0.0e+00 1440.6 722 100.0
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 2.1e-260 902.5 727 63.7
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 6.3e-249 864.4 734 61.0
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 7.4e-242 840.9 732 62.2
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.8e-241 839.0 732 62.2
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.4e-240 835.9 734 60.6
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.3e-238 830.1 734 59.4
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 6.5e-238 827.8 729 58.8
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 7.2e-237 824.3 732 58.7
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 7.2e-237 824.3 747 58.9
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 6.1e-236 821.2 735 58.9
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 5.2e-235 818.1 734 59.1
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 5.2e-235 818.1 744 58.1
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 3.3e-234 815.5 729 59.1
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.7e-233 812.0 732 58.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.1e-232 810.4 737 58.9
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 4.5e-231 805.1 737 59.7
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 5.9e-231 804.7 730 57.3
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.0e-230 803.9 732 57.5
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.1e-229 800.4 749 57.9
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.9e-229 799.7 736 59.1
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 1.4e-224 783.5 724 57.3
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 2.4e-224 782.7 724 57.2
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 2.2e-222 776.2 723 55.6
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.9e-222 775.8 734 56.4
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 2.9e-222 775.8 729 55.7
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.9e-221 773.1 724 55.8
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.9e-221 773.1 737 56.7
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 9.4e-221 770.8 742 55.8
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 1.6e-220 770.0 724 57.6
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.0e-219 767.3 734 55.6
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 4.4e-218 761.9 729 57.1
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.7e-217 760.0 729 56.4
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 6.3e-217 758.1 728 55.6
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 6.3e-217 758.1 730 55.6
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 9.1e-216 754.2 731 54.6
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 1.6e-215 753.4 730 55.6
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.7e-215 752.7 729 54.6
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.5e-215 752.3 735 55.0
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 7.7e-215 751.1 727 55.0
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 7.7e-215 751.1 732 54.1
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.3e-214 749.6 733 55.0
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 6.6e-214 748.0 726 54.1
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.9e-213 746.5 726 54.0
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.9e-213 746.5 733 54.6
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.3e-213 745.7 721 54.8
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.6e-212 743.4 767 52.3
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.8e-211 740.0 726 55.4
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 3.0e-211 739.2 734 53.0
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 3.0e-211 739.2 724 54.8
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 6.8e-211 738.0 731 53.9
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.5e-210 736.9 730 53.6
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.6e-210 736.1 748 52.9
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.6e-210 736.1 720 56.0
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 8.3e-209 731.1 732 54.4
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 9.2e-208 727.6 731 54.9
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 5.9e-207 724.9 730 53.0
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 5.9e-207 724.9 683 57.0
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.3e-206 723.8 717 55.5
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 1.6e-204 716.8 722 54.2
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 6.1e-204 714.9 717 54.0
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.1e-203 712.6 725 53.2
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.4e-200 703.7 741 53.2
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 3.2e-200 702.6 723 52.4
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.2e-200 702.6 752 52.0
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 9.2e-200 701.0 752 51.6
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.2e-199 700.7 734 52.0
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 5.0e-198 695.3 752 51.5
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.5e-197 693.7 742 52.3
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 2.5e-197 693.0 768 50.4
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 3.3e-197 692.6 753 51.4
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 3.3e-197 692.6 742 53.6
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.2e-196 690.6 736 52.0
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.2e-196 690.6 739 50.2
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.8e-196 689.5 753 50.7
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 4.7e-196 688.7 735 52.1
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.4e-195 687.2 736 51.8
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.8e-195 686.8 744 52.2
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.8e-195 686.8 750 51.1
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 4.0e-195 685.6 728 52.5
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-194 684.1 744 52.2
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.2e-194 684.1 748 50.8
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.9e-193 679.5 721 50.1
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 6.4e-193 678.3 649 56.2
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 3.2e-192 676.0 723 52.7
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 2.7e-191 672.9 750 50.1
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 7.8e-191 671.4 744 50.3
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.0e-190 671.0 744 51.2
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.7e-190 670.2 747 51.0
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.9e-189 666.8 634 54.9
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 5.6e-189 665.2 750 49.7
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 3.1e-187 659.4 782 48.3
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 7.5e-186 654.8 757 49.0
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.3e-185 654.1 754 49.2
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.7e-185 653.7 720 48.8
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 2.2e-185 653.3 722 49.9
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 3.7e-185 652.5 750 49.3
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.9e-184 650.2 679 52.3
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 2.1e-180 636.7 607 56.3
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 3.6e-180 636.0 827 47.3
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 4.7e-180 635.6 653 53.0
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 8.1e-180 634.8 719 49.0
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 1.2e-178 630.9 680 49.9
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 1.9e-176 623.6 644 51.9
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 7.1e-176 621.7 726 48.6
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 6.6e-174 615.1 641 53.5
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 4.3e-173 612.5 650 50.9
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 3.4e-170 602.8 719 48.3
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.7e-166 590.5 722 45.3
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.5e-157 560.8 652 46.9
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 5.7e-149 532.3 692 44.1
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 7.4e-149 531.9 770 40.5
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 8.2e-148 528.5 548 55.1
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.4e-147 527.7 500 54.6
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.6e-140 504.2 673 42.2
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 4.1e-131 473.0 767 39.1
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.2e-130 471.5 820 37.7
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.7e-124 451.1 721 38.8
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.7e-124 451.1 766 37.9
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 2.2e-124 450.7 751 38.9
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.6e-98 364.8 875 31.5
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 3.3e-96 357.1 533 41.5
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.8e-91 341.3 500 38.8
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 3.0e-81 307.4 245 72.2
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.7e-76 290.4 508 35.6
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 5.4e-67 260.0 675 29.3
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.6e-66 256.9 431 38.1
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 8.7e-49 199.5 195 50.8
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.4e-45 187.6 127 72.4
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.5e-45 187.2 222 43.2
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.2e-42 179.1 218 47.2
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 2.1e-42 178.3 304 35.9
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 3.7e-39 167.5 112 69.6
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 8.1e-39 166.4 151 53.6
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.7e-36 158.7 98 78.6
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 1.9e-35 155.2 94 75.5
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.6e-31 142.1 95 68.4
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 4.1e-30 137.5 130 55.4
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 3.9e-25 120.9 144 42.4
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.2e-18 99.4 75 65.3
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 3.1e-14 84.7 92 47.8
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 3.8e-12 77.8 429 23.8
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 5.5e-11 73.9 176 32.4
ATR0721G002 Amborella trichopoda HOM05D001312 ORTHO05D001832 1.4e-09 69.3 231 28.1
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 3.9e-09 67.8 211 29.9
Nn2g13967 Nelumbo nucifera HOM05D001312 ORTHO05D001832 2.0e-08 65.5 200 27.5
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 7.4e-08 63.5 280 27.1
Zm00001eb092810 Zea mays HOM05D001312 ORTHO05D001832 9.7e-08 63.2 171 29.8
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 1.7e-07 62.4 155 32.3
HanXRQChr01g0016711 Helianthus annuus HOM05D001312 ORTHO05D001832 1.7e-07 62.4 235 28.1
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 2.8e-07 61.6 160 30.0
Psat5g255240 Pisum sativum HOM05D001312 ORTHO05D001832 2.8e-07 61.6 279 27.6
SMO115G0301 Selaginella moellendorffii HOM05D001312 ORTHO05D001832 6.3e-07 60.5 206 28.2
SEGI_08770 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 6.3e-07 60.5 202 28.7
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 8.2e-07 60.1 202 26.2
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 1.1e-06 59.7 40 75.0
Solyc11g065160.3 Solanum lycopersicum HOM05D001312 ORTHO05D001832 2.4e-06 58.5 303 24.4
CDE02G1918 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 3.1e-06 58.2 185 27.0
CSS0005615 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D001832 4.1e-06 57.8 199 25.6
Peaxi162Scf00157g00417 Petunia axillaris HOM05D001312 ORTHO05D001832 4.1e-06 57.8 226 25.7
PGR119G2014 Punica granatum HOM05D001312 ORTHO05D001832 4.1e-06 57.8 157 29.3
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 4.1e-06 57.8 224 26.8
Zm00001eb406520 Zea mays HOM05D001312 ORTHO05D001832 4.1e-06 57.8 314 25.5
Nn6g35082 Nelumbo nucifera HOM05D001312 ORTHO05D001832 5.3e-06 57.4 216 25.9
Glyma.13G320100 Glycine max HOM05D001312 ORTHO05D001832 7.0e-06 57.0 154 29.9
Nitab4.5_0000442g0240 Nicotiana tabacum HOM05D001312 ORTHO05D001832 7.0e-06 57.0 162 29.0
Nitab4.5_0002571g0030 Nicotiana tabacum HOM05D001312 ORTHO05D001832 7.0e-06 57.0 160 28.8
Sopen11g024880 Solanum pennellii HOM05D001312 ORTHO05D001832 7.0e-06 57.0 303 24.8
TAR626G0101 Trochodendron aralioides HOM05D001439 ORTHO05D002726 7.0e-06 57.0 272 26.1
Nitab4.5_0004926g0010 Nicotiana tabacum HOM05D001312 ORTHO05D001832 9.1e-06 56.6 207 27.1


User provided reference genes

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