Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 0.0e+00 1676.4 866 100.0
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 0.0e+00 1148.7 865 69.1
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1146.0 866 67.6
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1137.5 866 68.1
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1127.9 867 66.9
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1122.1 868 68.1
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1121.7 868 68.0
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1117.4 867 67.1
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1111.3 867 66.6
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1103.6 869 67.4
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1102.4 868 66.2
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1092.8 870 66.6
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1091.3 826 68.5
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1087.8 869 65.8
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1083.2 869 65.5
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1082.8 870 65.3
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1082.0 866 65.9
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1081.6 867 66.6
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1080.9 869 65.5
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1076.6 870 66.0
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 2.4e-311 1072.0 868 64.5
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 2.4e-311 1072.0 868 65.7
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 1.2e-310 1069.7 869 65.6
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 2.0e-310 1068.9 866 65.1
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 2.0e-310 1068.9 868 64.7
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 2.6e-310 1068.5 869 64.7
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 7.6e-310 1067.0 869 64.6
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 8.4e-309 1063.5 869 64.9
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 1.1e-308 1063.1 868 65.2
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 1.4e-308 1062.8 868 65.2
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 9.3e-308 1060.1 869 64.4
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 2.3e-306 1055.4 871 63.4
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 3.9e-306 1054.7 868 64.7
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 1.5e-305 1052.7 866 64.3
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 2.5e-305 1052.0 875 63.0
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 1.6e-304 1049.3 825 66.1
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 1.4e-303 1046.2 862 64.3
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 2.4e-303 1045.4 868 63.8
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 2.9e-301 1038.5 865 64.0
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 8.8e-298 1026.9 885 62.6
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 2.8e-296 1021.9 875 61.0
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 6.3e-296 1020.8 869 61.9
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 6.3e-296 1020.8 850 63.6
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 1.1e-295 1020.0 862 63.2
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 1.1e-295 1020.0 871 63.3
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 3.1e-295 1018.5 874 62.4
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 5.3e-295 1017.7 868 62.2
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 5.3e-295 1017.7 869 62.6
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 1.5e-294 1016.1 878 62.8
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 1.0e-293 1013.4 868 62.4
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 1.3e-293 1013.1 869 62.7
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 1.7e-293 1012.7 868 63.2
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 2.9e-293 1011.9 868 61.6
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 2.9e-293 1011.9 867 62.5
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 1.9e-292 1009.2 866 62.4
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.9e-292 1009.2 869 62.4
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 3.6e-291 1005.0 866 62.8
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 6.7e-290 1000.7 878 61.6
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 1.1e-289 1000.0 874 61.7
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 4.4e-289 998.0 875 60.8
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 7.4e-289 997.3 873 62.0
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 1.3e-288 996.5 874 61.3
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 2.8e-288 995.3 873 61.3
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 6.3e-288 994.2 869 61.2
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 2.4e-287 992.3 874 61.3
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 7.7e-286 987.3 877 59.5
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 1.3e-285 986.5 872 61.0
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 7.2e-284 980.7 869 59.4
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 1.0e-282 976.9 874 61.4
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 1.8e-282 976.1 872 61.2
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 5.2e-282 974.5 874 61.0
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 1.5e-281 973.0 874 60.0
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 2.6e-281 972.2 915 58.4
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 4.1e-279 964.9 853 61.2
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 8.5e-277 957.2 869 59.3
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 2.3e-274 949.1 869 58.7
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 1.8e-271 939.5 869 58.2
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 4.1e-271 938.3 862 59.5
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 7.0e-271 937.6 832 61.1
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 8.5e-269 930.6 805 61.9
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 2.1e-267 926.0 857 59.3
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 2.0e-265 919.5 806 62.7
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 7.5e-265 917.5 808 61.0
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 6.8e-258 894.4 808 60.4
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 2.2e-256 889.4 755 63.7
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 4.9e-256 888.3 850 57.6
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 3.3e-252 875.5 875 55.2
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 7.3e-252 874.4 873 55.3
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 9.8e-249 864.0 755 62.1
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 2.9e-248 862.4 854 56.0
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 1.6e-243 846.7 867 54.2
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 1.3e-240 837.0 867 51.8
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 1.2e-238 830.5 874 52.2
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 7.3e-228 794.7 857 52.5
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 2.7e-222 776.2 811 54.6
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 4.8e-219 765.4 649 64.1
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 3.4e-209 732.6 691 60.3
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 3.7e-195 686.0 759 49.7
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 2.1e-166 590.5 740 46.2
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.1e-154 551.6 518 58.1
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 4.9e-147 526.2 428 64.7
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 7.5e-140 502.3 854 37.6
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 1.3e-139 501.5 877 37.7
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 1.8e-125 454.5 861 36.9
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 1.5e-103 381.7 309 64.4
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 1.1e-95 355.5 987 30.8
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 5.2e-48 197.2 189 58.2
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 2.5e-26 125.2 82 70.7
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 3.3e-26 124.8 100 62.0
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 9.2e-21 106.7 916 21.9
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 3.3e-18 98.2 567 24.0
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 1.4e-16 92.8 65 69.2
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 1.2e-15 89.7 63 63.5
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 9.8e-15 86.7 57 73.7
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 4.9e-14 84.3 57 68.4
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 2.1e-12 79.0 57 66.7
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 6.0e-12 77.4 65 56.9
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 7.8e-12 77.0 66 56.1
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 1.6e-09 69.3 88 50.0
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 5.2e-08 64.3 51 54.9
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 6.8e-08 63.9 101 45.5
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 6.8e-08 63.9 55 52.7
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 4.4e-07 61.2 596 23.7
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 1.7e-06 59.3 42 59.5


User provided reference genes

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