Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 5.3e-125 451.1 232 100.0
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 4.7e-81 305.1 232 71.6
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.2e-80 301.6 186 82.3
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 2.9e-78 295.8 212 71.2
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 6.4e-78 294.7 193 79.3
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 1.1e-77 293.9 212 70.8
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.4e-77 292.7 218 71.1
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.2e-77 292.4 193 78.2
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 4.1e-77 292.0 222 71.2
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 5.4e-77 291.6 199 74.4
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 5.4e-77 291.6 186 78.0
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 5.4e-77 291.6 238 69.7
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 9.2e-77 290.8 197 75.1
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.2e-76 290.4 220 68.6
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.6e-76 290.0 204 73.0
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.6e-76 290.0 212 73.6
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 2.0e-76 289.7 186 78.0
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 2.0e-76 289.7 215 69.3
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 3.5e-76 288.9 207 72.5
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 4.6e-76 288.5 221 68.8
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.6e-76 288.5 212 73.6
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 7.8e-76 287.7 186 76.9
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.0e-75 287.3 186 77.4
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 1.0e-75 287.3 225 67.6
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 1.0e-75 287.3 202 72.8
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 1.0e-75 287.3 202 72.8
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.0e-75 287.3 208 74.5
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.3e-75 287.0 217 68.2
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.3e-75 287.0 210 72.4
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.7e-75 286.6 210 71.9
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.7e-75 286.6 186 79.6
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 1.7e-75 286.6 212 71.7
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 3.0e-75 285.8 186 75.8
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.9e-75 285.4 203 74.4
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.1e-74 283.9 187 77.0
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 1.9e-74 283.1 239 65.3
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.9e-74 283.1 156 89.7
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.5e-74 282.7 207 70.5
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 3.3e-74 282.3 230 67.0
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.3e-74 282.3 195 73.3
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 4.3e-74 282.0 196 74.0
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.6e-74 281.6 191 74.9
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 5.6e-74 281.6 191 74.9
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 9.5e-74 280.8 157 87.9
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 9.5e-74 280.8 161 84.5
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 4.7e-73 278.5 220 66.8
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 6.2e-73 278.1 195 72.8
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 6.2e-73 278.1 195 72.8
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 6.2e-73 278.1 195 72.8
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 6.2e-73 278.1 219 66.7
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 6.2e-73 278.1 162 85.8
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 8.1e-73 277.7 228 66.2
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.4e-72 276.9 170 80.6
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.4e-72 276.9 207 70.0
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.4e-72 276.9 191 75.4
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.8e-72 276.6 197 72.1
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 2.3e-72 276.2 242 63.2
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 2.3e-72 276.2 211 69.2
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 3.1e-72 275.8 234 66.2
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 4.0e-72 275.4 202 70.3
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 5.2e-72 275.0 182 78.0
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 6.8e-72 274.6 210 69.0
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 8.9e-72 274.2 158 86.7
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 8.9e-72 274.2 231 66.7
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 2.0e-71 273.1 202 68.8
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 2.0e-71 273.1 198 69.2
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 3.4e-71 272.3 206 68.9
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 4.4e-71 271.9 240 63.3
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 5.8e-71 271.6 184 75.0
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 7.5e-71 271.2 202 69.3
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 3.7e-70 268.9 191 71.7
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 4.9e-70 268.5 225 67.6
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 8.3e-70 267.7 157 83.4
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-69 267.3 166 81.9
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.4e-69 266.9 207 69.1
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.9e-69 266.5 209 67.9
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 1.9e-69 266.5 203 69.0
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.9e-69 266.5 158 84.8
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.9e-69 266.5 210 69.0
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 2.4e-69 266.2 148 89.2
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 3.2e-69 265.8 206 69.4
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.2e-69 265.8 206 69.4
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 3.2e-69 265.8 201 68.7
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 4.1e-69 265.4 210 68.6
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 5.4e-69 265.0 241 60.6
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 5.4e-69 265.0 209 68.4
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.6e-68 263.5 207 69.1
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 2.1e-68 263.1 201 69.2
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.7e-68 262.7 216 64.4
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 6.0e-68 261.5 189 69.3
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 1.0e-67 260.8 167 74.9
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.7e-67 260.0 201 67.7
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 3.9e-67 258.8 234 62.4
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 8.6e-67 257.7 197 68.0
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 8.6e-67 257.7 197 69.0
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.5e-66 256.9 175 75.4
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 3.3e-66 255.8 166 75.3
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 4.3e-66 255.4 235 60.9
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 4.3e-66 255.4 155 81.9
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 9.5e-66 254.2 209 65.6
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.2e-65 253.8 216 63.9
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.2e-65 253.8 216 64.4
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.2e-65 253.8 209 65.6
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 2.8e-65 252.7 139 87.8
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 3.6e-65 252.3 205 64.9
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 4.7e-65 251.9 236 59.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 6.2e-65 251.5 235 60.4
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.1e-64 250.8 192 68.2
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.1e-64 250.8 187 68.4
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.8e-64 250.0 176 75.6
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.8e-64 250.0 222 62.6
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 3.1e-64 249.2 152 79.6
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.0e-64 248.8 174 71.3
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.7e-62 243.4 215 61.9
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 3.8e-62 242.3 236 58.9
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.1e-61 240.7 139 83.5
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 7.1e-61 238.0 218 60.6
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 1.6e-60 236.9 201 65.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.6e-60 236.9 206 64.6
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 4.6e-60 235.3 156 71.2
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.0e-59 234.2 150 74.7
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.6e-59 231.5 209 61.2
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 8.7e-59 231.1 156 71.8
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 7.3e-58 228.0 133 84.2
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 1.6e-57 226.9 139 79.9
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 2.8e-57 226.1 155 67.7
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 4.7e-57 225.3 139 77.7
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 6.9e-56 221.5 127 84.3
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 1.2e-55 220.7 127 82.7
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 2.6e-55 219.5 132 81.8
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 9.9e-55 217.6 156 67.3
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 3.0e-51 206.1 187 62.6
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 3.6e-49 199.1 173 65.9
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.8e-48 196.8 172 61.0
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 9.0e-48 194.5 232 52.2
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 2.0e-47 193.4 152 66.4
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 3.4e-47 192.6 126 74.6
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 4.5e-47 192.2 139 72.7
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 3.8e-46 189.1 136 72.8
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 8.4e-46 188.0 141 61.0
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.4e-45 187.2 145 60.7
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 3.9e-43 179.1 106 83.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 7.4e-42 174.9 97 81.4
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 1.1e-40 171.0 97 84.5
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.6e-39 164.9 187 56.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.7e-38 163.7 148 54.7
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.3e-34 149.4 150 58.0
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 4.3e-34 149.1 121 65.3
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 8.2e-33 144.8 77 92.2
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 5.3e-32 142.1 132 50.0
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.0e-32 141.4 209 45.9
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.0e-32 141.4 176 51.1
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-31 139.8 77 88.3
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 3.4e-31 139.4 94 77.7
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 2.5e-29 133.3 74 82.4
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 5.5e-29 132.1 91 70.3
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 8.7e-27 124.8 89 67.4
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 3.3e-26 122.9 85 69.4
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-24 117.9 80 73.8
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 1.6e-20 104.0 70 71.4
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 2.1e-20 103.6 72 75.0
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 7.4e-18 95.1 136 50.7
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 2.8e-17 93.2 47 91.5
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-14 84.0 52 78.8
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 6.5e-14 82.0 42 92.9
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 8.5e-14 81.6 42 90.5
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 1.8e-11 73.9 125 44.0
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 5.7e-10 68.9 37 83.8
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 1.7e-09 67.4 140 41.4
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 9.1e-08 61.6 96 36.5
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 2.0e-07 60.5 32 87.5
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 5.9e-07 58.9 32 93.8
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 5.0e-06 55.8 40 67.5
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 6.5e-06 55.5 40 72.5
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 6.5e-06 55.5 40 72.5


User provided reference genes

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