Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2606 Punica granatum HOM05D007974 ORTHO05D010062 6.3e-67 257.3 129 100.0
Eucgr.K00232 Eucalyptus grandis HOM05D007974 ORTHO05D010062 5.5e-31 137.9 122 57.4
Eucgr.L02686 Eucalyptus grandis HOM05D007974 ORTHO05D010062 7.2e-31 137.5 122 57.4
Actinidia32884 Actinidia chinensis HOM05D007974 ORTHO05D010062 4.0e-29 131.7 108 57.4
GSVIVG01010603001 Vitis vinifera HOM05D007974 ORTHO05D010062 1.5e-28 129.8 89 65.2
Atru.chr1.506 Acer truncatum HOM05D007974 ORTHO05D010062 2.0e-28 129.4 114 50.9
Duzib068G0871 Durio zibethinus HOM05D007974 ORTHO05D010062 7.5e-28 127.5 109 55.0
Actinidia34090 Actinidia chinensis HOM05D007974 ORTHO05D010062 9.8e-28 127.1 110 55.5
CiPaw.04G066500 Carya illinoinensis HOM05D007974 ORTHO05D010062 9.8e-28 127.1 113 51.3
Dinv28469 Davidia involucrata HOM05D007974 ORTHO05D010062 9.8e-28 127.1 90 63.3
Hma1.2p1_0270F.1_g108330 Hydrangea macrophylla HOM05D007974 ORTHO05D010062 2.2e-27 125.9 89 65.2
Thecc.03G172000 Theobroma cacao HOM05D007974 ORTHO05D010062 2.8e-27 125.6 108 53.7
Aqoxy5G03970 Aquilegia oxysepala HOM05D007974 ORTHO05D010062 4.9e-27 124.8 103 57.3
DCAR_018180 Daucus carota HOM05D007974 ORTHO05D010062 4.9e-27 124.8 118 51.7
Lsat_1_v5_gn_8_6981 Lactuca sativa HOM05D007974 ORTHO05D010062 4.9e-27 124.8 111 51.4
ECA233G5549 Erigeron canadensis HOM05D007974 ORTHO05D010062 1.8e-26 122.9 111 53.2
Cpa.g.sc107.23 Carica papaya HOM05D007974 ORTHO05D010062 2.4e-26 122.5 91 59.3
arahy.Tifrunner.gnm1.ann1.G5CYYB Arachis hypogaea HOM05D007974 ORTHO05D010062 4.1e-26 121.7 114 53.5
CSS0036952 Camellia sinensis var. sinensis HOM05D007974 ORTHO05D010062 5.4e-26 121.3 117 52.1
MBI12_g15161_MAGBIO Magnolia biondii HOM05D007974 ORTHO05D010062 5.4e-26 121.3 108 55.6
QL09p014742 Quercus lobata HOM05D007974 ORTHO05D010062 7.0e-26 120.9 107 50.5
Rhsim03G0178300 Rhododendron simsii HOM05D007974 ORTHO05D010062 7.0e-26 120.9 110 53.6
MSTRG.8445 Avicennia marina HOM05D007974 ORTHO05D010062 1.2e-25 120.2 120 50.8
Potri.012G139700 Populus trichocarpa HOM05D007974 ORTHO05D010062 1.6e-25 119.8 106 52.8
HanXRQChr13g0393691 Helianthus annuus HOM05D007974 ORTHO05D010062 3.5e-25 118.6 110 49.1
Glyma.20G156300 Glycine max HOM05D007974 ORTHO05D010062 4.5e-25 118.2 107 55.1
Sopen03g004930 Solanum pennellii HOM05D007974 ORTHO05D010062 1.0e-24 117.1 112 51.8
Nitab4.5_0002107g0020 Nicotiana tabacum HOM05D007974 ORTHO05D010062 1.3e-24 116.7 88 60.2
Nitab4.5_0004843g0030 Nicotiana tabacum HOM05D007974 ORTHO05D010062 1.3e-24 116.7 88 60.2
Solyc03g026090.4 Solanum lycopersicum HOM05D007974 ORTHO05D010062 1.7e-24 116.3 110 52.7
CiPaw.03G103600 Carya illinoinensis HOM05D007974 ORTHO05D010062 2.3e-24 115.9 113 48.7
LjContig00238g0026064 Lotus japonicus HOM05D007974 ORTHO05D010062 2.3e-24 115.9 110 52.7
Oeu022576.1 Olea europaea HOM05D007974 ORTHO05D010062 2.3e-24 115.9 89 59.6
PGSC0003DMG400014320 Solanum tuberosum HOM05D007974 ORTHO05D010062 2.9e-24 115.5 90 58.9
Migut.F01135 Erythranthe guttata HOM05D007974 ORTHO05D010062 5.0e-24 114.8 109 52.3
EL10Ac3g05720 Beta vulgaris HOM05D007974 ORTHO05D010062 3.3e-23 112.1 109 51.4
Glyma.10G238250 Glycine max HOM05D007974 ORTHO05D010062 3.3e-23 112.1 102 54.9
MD01G1197800 Malus domestica HOM05D007974 ORTHO05D010062 3.3e-23 112.1 89 57.3
CAN.G769.6 Capsicum annuum HOM05D007974 ORTHO05D010062 4.3e-23 111.7 109 50.5
TPR.G17393 Trifolium pratense HOM05D007974 ORTHO05D010062 4.3e-23 111.7 104 51.0
Manes.06G145100 Manihot esculenta HOM05D007974 ORTHO05D010062 5.6e-23 111.3 102 52.9
COL.COLO4_14276 Corchorus olitorius HOM05D000659 ORTHO05D000505 7.3e-23 110.9 108 50.9
Prupe.2G291200 Prunus persica HOM05D007974 ORTHO05D010062 7.3e-23 110.9 106 50.9
Cfa008290 Carpinus fangiana HOM05D007974 ORTHO05D010062 1.6e-22 109.8 91 57.1
VMungo0720G1552 Vigna mungo HOM05D007974 ORTHO05D010062 2.8e-22 109.0 107 49.5
Nn6g34222 Nelumbo nucifera HOM05D007974 ORTHO05D010062 4.7e-22 108.2 90 53.3
Ciclev10006787m.g Citrus clementina HOM05D007974 ORTHO05D010062 4.0e-21 105.1 89 51.7
Phvul.007G067200 Phaseolus vulgaris HOM05D007974 ORTHO05D010062 4.0e-21 105.1 107 47.7
Sabra12G0104700 Salix brachista HOM05D000659 ORTHO05D000505 4.0e-21 105.1 87 55.2
Sc19g0000020 Simmondsia chinensis HOM05D007974 ORTHO05D010062 5.2e-21 104.8 90 54.4
RcHm_v2.0_Chr1g0376841 Rosa chinensis HOM05D007974 ORTHO05D010062 1.2e-20 103.6 114 51.8
Gohir.D12G260800 Gossypium hirsutum HOM05D007974 ORTHO05D010062 1.5e-20 103.2 109 46.8
AL8G38840 Arabidopsis lyrata HOM05D007974 ORTHO05D010062 2.0e-20 102.8 111 45.9
Gorai.008G279400 Gossypium raimondii HOM05D007974 ORTHO05D010062 2.0e-20 102.8 110 46.4
ATR0757G011 Amborella trichopoda HOM05D007974 ORTHO05D010062 2.6e-20 102.4 108 43.5
Sc19g0001640 Simmondsia chinensis HOM05D007974 ORTHO05D010062 3.4e-20 102.1 90 53.3
Aa31LG11G1470 Aethionema arabicum HOM05D007974 ORTHO05D010062 9.8e-20 100.5 117 41.0
Thhalv10005335m.g Eutrema salsugineum HOM05D007974 ORTHO05D010062 9.8e-20 100.5 107 46.7
AT5G62065 Arabidopsis thaliana HOM05D007974 ORTHO05D010062 2.2e-19 99.4 107 45.8
Gohir.A12G260000 Gossypium hirsutum HOM05D007974 ORTHO05D010062 2.2e-19 99.4 109 45.0
Medtr1g101320 Medicago truncatula HOM05D007974 ORTHO05D010062 3.7e-19 98.6 107 47.7
THA.LOC104820164 Tarenaya hassleriana HOM05D007974 ORTHO05D010062 3.7e-19 98.6 92 50.0
BraA06t25817Z Brassica rapa HOM05D007974 ORTHO05D010062 6.4e-19 97.8 111 44.1
A06p28760 Brassica napus HOM05D007974 ORTHO05D010062 8.3e-19 97.4 111 44.1
C03p64890 Brassica napus HOM05D007974 ORTHO05D010062 1.4e-18 96.7 113 42.5
BolC3t18751H Brassica oleracea HOM05D007974 ORTHO05D010062 1.4e-18 96.7 113 42.5
FAN06G2079 Fragaria x ananassa HOM05D007974 ORTHO05D010062 1.8e-18 96.3 114 44.7
BcaB02g09619 Brassica carinata HOM05D007974 ORTHO05D010062 2.4e-18 95.9 91 48.4
FvH4_7g29100 Fragaria vesca HOM05D007974 ORTHO05D010062 7.0e-18 94.4 112 44.6
FAN03G0127 Fragaria x ananassa HOM05D007974 ORTHO05D010062 9.2e-18 94.0 93 50.5
Carub.0008s2274 Capsella rubella HOM05D007974 ORTHO05D010062 2.0e-17 92.8 106 43.4
Sp2g25230 Schrenkiella parvula HOM05D007974 ORTHO05D010062 2.0e-17 92.8 89 49.4
CARHR275850 Cardamine hirsuta HOM05D007974 ORTHO05D010062 2.7e-17 92.4 129 41.1
FAN10G0057 Fragaria x ananassa HOM05D007974 ORTHO05D010062 2.7e-17 92.4 112 43.8
FAN03G1543 Fragaria x ananassa HOM05D007974 ORTHO05D010062 6.6e-16 87.8 93 48.4
Potri.015G142100 Populus trichocarpa HOM05D007974 ORTHO05D010062 5.2e-13 78.2 74 48.6
Gohir.D11G325151 Gossypium hirsutum HOM05D007974 ORTHO05D010062 1.5e-12 76.6 72 47.2
Actinidia03112 Actinidia chinensis HOM05D007974 ORTHO05D010062 2.0e-12 76.3 115 39.1
Lsat_1_v5_gn_2_131621 Lactuca sativa HOM05D007974 ORTHO05D010062 3.4e-12 75.5 90 46.7
Migut.J00047 Erythranthe guttata HOM05D000275 ORTHO05D000181 3.5e-09 65.5 110 34.5
SEGI_03035 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 3.5e-09 65.5 110 33.6
Sc07g0005920 Simmondsia chinensis HOM05D000275 ORTHO05D000181 1.7e-08 63.2 107 32.7
unitig_27.g24888 Utricularia gibba HOM05D000275 ORTHO05D000181 3.0e-08 62.4 118 33.1
Aa31LG5G11520 Aethionema arabicum HOM05D000275 ORTHO05D000181 1.1e-07 60.5 124 36.3
TAR623G0763 Trochodendron aralioides HOM05D000275 ORTHO05D000181 1.1e-07 60.5 114 33.3
SEGI_16300 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 1.5e-07 60.1 88 31.8
Aqoxy4G02395 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 1.9e-07 59.7 118 33.1
Cfa010681 Carpinus fangiana HOM05D000275 ORTHO05D000181 1.9e-07 59.7 116 31.9
Medtr1g040335 Medicago truncatula HOM05D000275 ORTHO05D000181 1.9e-07 59.7 103 35.0
C03p19030 Brassica napus HOM05D000275 ORTHO05D000181 2.5e-07 59.3 114 31.6
HanXRQChr01g0018461 Helianthus annuus HOM05D000275 ORTHO05D000181 2.5e-07 59.3 108 34.3
Lsat_1_v5_gn_1_89881 Lactuca sativa HOM05D000275 ORTHO05D000181 2.5e-07 59.3 105 33.3
A04p29460 Brassica napus HOM05D000275 ORTHO05D000181 3.3e-07 58.9 119 35.3
Migut.H00915 Erythranthe guttata HOM05D000275 ORTHO05D000181 3.3e-07 58.9 112 27.7
Sc07g0005900 Simmondsia chinensis HOM05D000275 ORTHO05D000181 3.3e-07 58.9 103 36.9
SalBow2G2865 Salvia bowleyana HOM05D000275 ORTHO05D000181 4.3e-07 58.5 116 32.8
BraA04t18413Z Brassica rapa HOM05D000275 ORTHO05D000181 5.6e-07 58.2 119 35.3
Medtr7g072993 Medicago truncatula HOM05D000275 ORTHO05D000181 5.6e-07 58.2 106 34.9
Thecc.04G152500 Theobroma cacao HOM05D000275 ORTHO05D000181 5.6e-07 58.2 122 31.1
Actinidia31722 Actinidia chinensis HOM05D000275 ORTHO05D000181 7.3e-07 57.8 111 33.3
Aa31sc23G310 Aethionema arabicum HOM05D000275 ORTHO05D000181 7.3e-07 57.8 115 33.9
CiPaw.15G186600 Carya illinoinensis HOM05D000275 ORTHO05D000181 7.3e-07 57.8 103 34.0
Lsat_1_v5_gn_1_72961 Lactuca sativa HOM05D000275 ORTHO05D000181 7.3e-07 57.8 114 36.0
Lsat_1_v5_gn_5_152441 Lactuca sativa HOM05D000275 ORTHO05D000181 7.3e-07 57.8 117 31.6
SGA_v2.0_scaffold59G20687 Striga asiatica HOM05D000275 ORTHO05D000181 7.3e-07 57.8 111 33.3
BolC4t28177H Brassica oleracea HOM05D000275 ORTHO05D000181 9.5e-07 57.4 119 35.3
AUR62029724 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.2e-06 57.0 107 36.4
Os11g0115350 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 1.2e-06 57.0 110 33.6
BcaB04g18572 Brassica carinata HOM05D000275 ORTHO05D000181 1.6e-06 56.6 112 33.9
BcaC01g04195 Brassica carinata HOM05D000275 ORTHO05D000181 1.6e-06 56.6 112 35.7
BcaC01g06124 Brassica carinata HOM05D000275 ORTHO05D000181 1.6e-06 56.6 114 30.7
C03p19020 Brassica napus HOM05D000275 ORTHO05D000181 1.6e-06 56.6 114 30.7
C03p43980 Brassica napus HOM05D000275 ORTHO05D000181 1.6e-06 56.6 112 35.7
BolC3t14291H Brassica oleracea HOM05D000275 ORTHO05D000181 1.6e-06 56.6 114 30.7
BolC3t16669H Brassica oleracea HOM05D000275 ORTHO05D000181 1.6e-06 56.6 112 35.7
AUR62029722 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.6e-06 56.6 117 35.9
Haze_03292 Corylus avellana HOM05D000275 ORTHO05D000181 1.6e-06 56.6 116 30.2
DCAR_015724 Daucus carota HOM05D000275 ORTHO05D000181 1.6e-06 56.6 107 30.8
Migut.H00916 Erythranthe guttata HOM05D000275 ORTHO05D000181 1.6e-06 56.6 116 27.6
SEGI_27859 Sequoiadendron giganteum HOM05D000275 ORTHO05D010062 1.6e-06 56.6 88 33.0
A03p36370 Brassica napus HOM05D000275 ORTHO05D000181 2.1e-06 56.2 112 35.7
A03p36390 Brassica napus HOM05D000275 ORTHO05D000181 2.1e-06 56.2 112 35.7
BraA03t12807Z Brassica rapa HOM05D000275 ORTHO05D000181 2.1e-06 56.2 112 35.7
Medtr7g073060 Medicago truncatula HOM05D000275 ORTHO05D000181 2.1e-06 56.2 103 32.0
HanXRQChr15g0463511 Helianthus annuus HOM05D000275 ORTHO05D000181 2.8e-06 55.8 117 33.3
Lsat_1_v5_gn_5_152461 Lactuca sativa HOM05D000275 ORTHO05D000181 3.6e-06 55.5 115 33.0
QL04p000796 Quercus lobata HOM05D000275 ORTHO05D000181 3.6e-06 55.5 107 30.8
Zm00001eb163880 Zea mays HOM05D000275 ORTHO05D000181 3.6e-06 55.5 89 38.2
BcaB01g04593 Brassica carinata HOM05D000275 ORTHO05D000181 4.7e-06 55.1 115 31.3
CANSAT35G0200 Cannabis sativa HOM05D000275 ORTHO05D000181 4.7e-06 55.1 104 31.7
CARHR285680 Cardamine hirsuta HOM05D000275 ORTHO05D000181 4.7e-06 55.1 113 32.7
HanXRQChr10g0291651 Helianthus annuus HOM05D000275 ORTHO05D000181 4.7e-06 55.1 117 33.3
Os01g0219500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D049927 4.7e-06 55.1 89 34.8
Os12g0115000 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 4.7e-06 55.1 117 33.3
Atru.chr8.2392 Acer truncatum HOM05D000275 ORTHO05D000181 6.2e-06 54.7 115 32.2
A03p16150 Brassica napus HOM05D000275 ORTHO05D000181 6.2e-06 54.7 114 31.6
BraA03t10906Z Brassica rapa HOM05D000275 ORTHO05D000181 6.2e-06 54.7 114 31.6
CSS0044170 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 6.2e-06 54.7 116 31.9
Duzib151G1053 Durio zibethinus HOM05D000275 ORTHO05D000181 6.2e-06 54.7 107 31.8
ECA248G1881 Erigeron canadensis HOM05D000275 ORTHO05D000181 6.2e-06 54.7 106 36.8
Sp4g20870 Schrenkiella parvula HOM05D000275 ORTHO05D000181 6.2e-06 54.7 118 34.7
Sc26g0004520 Simmondsia chinensis HOM05D000275 ORTHO05D000181 6.2e-06 54.7 107 32.7
vmacro22473 Vaccinium macrocarpon HOM05D000275 ORTHO05D000181 6.2e-06 54.7 110 32.7
MSTRG.4993 Avicennia marina HOM05D000275 ORTHO05D000181 8.1e-06 54.3 115 30.4
C03p13820 Brassica napus HOM05D000275 ORTHO05D000181 8.1e-06 54.3 117 29.9
C04p66750 Brassica napus HOM05D000275 ORTHO05D000181 8.1e-06 54.3 119 34.5
AUR62006385 Chenopodium quinoa HOM05D000275 ORTHO05D000181 8.1e-06 54.3 107 34.6
Dinv11361 Davidia involucrata HOM05D000275 ORTHO05D000181 8.1e-06 54.3 119 31.1
Glyma.18G214500 Glycine max HOM05D000275 ORTHO05D000181 8.1e-06 54.3 105 28.6


User provided reference genes

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