Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 7.2e-102 374.0 201 100.0
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 8.9e-44 181.0 188 59.6
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 6.0e-40 168.3 186 56.5
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 6.0e-40 168.3 186 56.5
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.3e-39 167.2 187 53.5
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 2.3e-39 166.4 187 55.1
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 3.9e-39 165.6 188 57.4
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 1.1e-38 164.1 185 57.3
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.5e-38 163.7 183 54.1
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 7.3e-38 161.4 182 55.5
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.6e-37 160.2 183 54.1
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 1.6e-37 160.2 183 53.6
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 2.8e-37 159.5 187 53.5
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 3.6e-37 159.1 186 53.8
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 3.6e-37 159.1 189 55.0
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 4.7e-37 158.7 188 52.7
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 4.7e-37 158.7 178 54.5
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 6.2e-37 158.3 194 53.6
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.1e-36 157.5 186 53.8
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 5.2e-36 155.2 188 53.2
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 6.8e-36 154.8 186 53.8
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 8.9e-36 154.5 190 51.6
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 8.9e-36 154.5 188 52.1
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.5e-35 153.7 185 51.4
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 2.0e-35 153.3 186 51.1
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 3.4e-35 152.5 205 49.3
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 4.4e-35 152.1 178 53.9
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 5.8e-35 151.8 182 51.6
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.7e-34 150.2 185 50.3
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.2e-34 149.8 186 49.5
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 2.9e-34 149.4 190 51.1
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 2.9e-34 149.4 185 48.1
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 6.4e-34 148.3 189 49.2
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.4e-33 147.1 188 48.4
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.4e-33 147.1 182 50.5
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.9e-33 146.7 186 48.9
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.2e-33 146.0 179 51.4
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 3.2e-33 146.0 186 48.9
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 3.2e-33 146.0 187 51.3
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 5.4e-33 145.2 185 55.1
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 5.4e-33 145.2 190 44.2
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 5.4e-33 145.2 185 50.8
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 7.1e-33 144.8 185 51.9
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 7.1e-33 144.8 199 51.8
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 9.2e-33 144.4 196 50.0
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 3.5e-32 142.5 186 48.9
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 4.6e-32 142.1 188 51.6
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 4.6e-32 142.1 189 51.3
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 6.0e-32 141.7 186 50.5
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 6.0e-32 141.7 187 51.9
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 6.0e-32 141.7 187 52.9
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 7.8e-32 141.4 189 45.5
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 3.0e-31 139.4 191 47.6
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 3.9e-31 139.0 188 46.8
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 3.9e-31 139.0 187 49.2
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 3.3e-30 136.0 184 46.7
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 3.3e-30 136.0 186 48.4
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 3.3e-30 136.0 192 51.0
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 4.3e-30 135.6 154 56.5
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 7.3e-30 134.8 190 49.5
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 9.5e-30 134.4 190 45.3
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 3.6e-29 132.5 185 44.9
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 6.2e-29 131.7 186 45.2
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 6.2e-29 131.7 188 44.7
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.1e-28 131.0 186 48.4
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 1.4e-28 130.6 189 46.6
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.4e-28 130.6 188 44.1
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 3.1e-28 129.4 185 47.6
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 4.0e-28 129.0 186 44.1
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 8.9e-28 127.9 156 51.9
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 1.2e-27 127.5 187 49.2
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.2e-27 127.5 191 45.5
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 4.4e-27 125.6 183 43.7
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 4.4e-27 125.6 163 51.5
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 7.6e-27 124.8 190 42.1
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 1.7e-26 123.6 183 43.2
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.7e-26 123.6 156 51.3
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 3.8e-26 122.5 183 42.1
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 4.9e-26 122.1 183 42.6
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 4.9e-26 122.1 183 42.6
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 4.9e-26 122.1 183 42.1
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 6.4e-26 121.7 183 45.4
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 8.4e-26 121.3 183 41.5
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.1e-25 120.9 151 51.7
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.4e-25 120.6 198 42.9
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.4e-25 120.6 184 47.3
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 2.4e-25 119.8 184 45.7
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 2.4e-25 119.8 184 42.4
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 3.2e-25 119.4 183 42.1
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 3.2e-25 119.4 183 42.1
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 3.2e-25 119.4 184 46.7
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 7.1e-25 118.2 183 41.0
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 7.1e-25 118.2 183 41.0
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 7.1e-25 118.2 182 47.3
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 1.2e-24 117.5 187 43.3
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 1.2e-24 117.5 187 43.3
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 1.6e-24 117.1 183 41.0
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 2.1e-24 116.7 158 51.3
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 3.5e-24 115.9 186 43.5
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 4.6e-24 115.5 188 43.1
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 6.0e-24 115.2 186 43.0
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 7.8e-24 114.8 184 41.3
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 7.8e-24 114.8 184 41.3
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 7.8e-24 114.8 184 41.8
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.0e-23 114.4 189 41.8
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.3e-23 114.0 157 49.0
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.3e-23 114.0 187 43.3
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 1.7e-23 113.6 184 40.8
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 3.0e-23 112.8 192 42.2
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 3.9e-23 112.5 183 39.3
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 3.9e-23 112.5 183 39.3
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 3.9e-23 112.5 153 49.0
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 8.7e-23 111.3 153 49.0
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 9.6e-22 107.8 153 48.4
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 9.6e-22 107.8 186 40.9
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.6e-21 107.1 182 40.7
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.1e-21 106.7 191 41.9
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 8.1e-21 104.8 185 42.2
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.9e-20 101.7 189 38.1
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 1.5e-19 100.5 188 37.2
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 3.4e-19 99.4 180 41.1
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 9.9e-19 97.8 184 37.5
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.2e-18 96.7 153 41.8
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.9e-18 96.3 184 38.6
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 4.9e-18 95.5 193 36.8
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 6.4e-18 95.1 181 42.0
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 1.4e-17 94.0 184 38.6
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 5.4e-17 92.0 167 40.7
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 7.1e-17 91.7 185 36.2
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.6e-16 90.5 178 37.1
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 2.1e-16 90.1 186 37.6
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 2.1e-16 90.1 186 37.6
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 6.0e-16 88.6 186 37.1
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 1.0e-15 87.8 184 37.5
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 1.0e-15 87.8 184 37.5
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 3.9e-15 85.9 111 45.9
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 3.9e-15 85.9 77 61.0
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 8.7e-15 84.7 183 35.5
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 8.7e-15 84.7 196 34.2
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 2.1e-13 80.1 184 34.2
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 3.6e-13 79.3 183 35.0
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.4e-12 77.4 196 34.2
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 3.1e-12 76.3 52 71.2
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.4e-11 72.8 189 32.8
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 4.5e-11 72.4 149 37.6
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 2.9e-10 69.7 183 31.1
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 4.9e-10 68.9 75 45.3
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.4e-09 67.4 191 29.8
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 4.2e-09 65.9 160 33.8
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 2.1e-08 63.5 179 32.4
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 6.7e-07 58.5 41 68.3
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 6.7e-07 58.5 193 31.1
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.9e-06 57.0 159 31.4
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 5.6e-06 55.5 195 28.7
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 5.6e-06 55.5 183 27.3
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 5.6e-06 55.5 51 51.0
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 9.6e-06 54.7 176 29.0


User provided reference genes

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