Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 1.2e-172 609.8 317 100.0
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 1.6e-34 151.0 336 39.0
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 4.5e-34 149.4 322 41.0
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 6.3e-28 129.0 332 36.4
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 3.1e-27 126.7 331 34.7
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 7.0e-27 125.6 327 34.6
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 2.7e-26 123.6 311 33.4
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.5e-24 117.9 337 32.6
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 4.2e-24 116.3 323 34.7
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 7.2e-24 115.5 311 36.3
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 1.2e-23 114.8 312 32.7
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 8.0e-23 112.1 363 32.5
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 8.0e-23 112.1 310 36.1
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 1.4e-22 111.3 307 33.6
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 4.0e-22 109.8 330 34.8
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 6.8e-22 109.0 343 33.2
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 6.8e-22 109.0 343 33.2
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 6.8e-22 109.0 338 33.7
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 8.8e-22 108.6 325 34.2
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 1.5e-21 107.8 336 33.9
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 1.5e-21 107.8 309 31.1
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 1.5e-21 107.8 336 31.2
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 2.6e-21 107.1 338 30.8
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 4.4e-21 106.3 306 32.7
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 6.3e-20 102.4 322 31.7
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 1.1e-19 101.7 355 31.8
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 2.4e-19 100.5 317 33.8
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 3.1e-19 100.1 320 30.9
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 4.1e-19 99.8 79 63.3
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 7.0e-19 99.0 312 32.4
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 1.2e-18 98.2 323 33.7
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 4.5e-18 96.3 311 30.9
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 7.8e-18 95.5 312 31.1
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 1.0e-17 95.1 89 53.9
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 1.3e-17 94.7 89 56.2
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 1.3e-17 94.7 86 53.5
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 6.6e-17 92.4 339 31.0
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 6.6e-17 92.4 323 28.8
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 1.9e-16 90.9 310 30.6
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 1.9e-16 90.9 328 33.2
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 1.9e-16 90.9 324 29.6
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 4.3e-16 89.7 321 28.7
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 5.6e-16 89.4 329 32.8
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 7.3e-16 89.0 125 44.0
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 7.3e-16 89.0 327 32.1
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 7.3e-16 89.0 287 30.0
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 1.2e-15 88.2 85 52.9
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 1.2e-15 88.2 125 41.6
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 1.6e-15 87.8 85 51.8
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 1.6e-15 87.8 129 41.1
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 2.1e-15 87.4 95 48.4
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 4.7e-15 86.3 88 48.9
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 6.1e-15 85.9 84 53.6
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 6.1e-15 85.9 117 41.0
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 8.0e-15 85.5 88 48.9
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 8.0e-15 85.5 189 33.9
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 1.0e-14 85.1 117 41.0
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 1.0e-14 85.1 86 48.8
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 1.4e-14 84.7 146 38.4
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 1.4e-14 84.7 146 38.4
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 1.4e-14 84.7 122 45.1
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 1.8e-14 84.3 117 41.0
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 2.3e-14 84.0 88 47.7
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 2.3e-14 84.0 323 30.0
DCAR_002584 Daucus carota HOM05D006433 ORTHO05D005382 2.3e-14 84.0 286 29.0
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 4.0e-14 83.2 133 40.6
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 4.0e-14 83.2 84 54.8
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 4.0e-14 83.2 84 51.2
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 5.2e-14 82.8 133 41.4
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 6.8e-14 82.4 89 48.3
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 6.8e-14 82.4 89 48.3
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 8.9e-14 82.0 330 31.8
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 1.5e-13 81.3 89 44.9
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 1.5e-13 81.3 91 51.6
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 1.5e-13 81.3 114 40.4
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 2.0e-13 80.9 124 42.7
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 2.0e-13 80.9 84 48.8
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 2.6e-13 80.5 130 37.7
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 2.6e-13 80.5 86 47.7
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 4.4e-13 79.7 141 40.4
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 5.7e-13 79.3 91 49.5
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 9.8e-13 78.6 308 28.9
SalBow2G0414 Salvia bowleyana HOM05D006433 ORTHO05D005382 2.2e-12 77.4 119 42.0
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 2.9e-12 77.0 145 35.9
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 2.9e-12 77.0 84 51.2
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 1.1e-11 75.1 79 45.6
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 1.8e-11 74.3 307 28.0
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 5.4e-11 72.8 83 41.0
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 9.2e-11 72.0 333 28.8
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 9.2e-11 72.0 76 46.1
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 2.0e-10 70.9 126 35.7
MELO3C023593.2 Cucumis melo HOM05D027220 ORTHO05D005382 2.7e-10 70.5 232 29.3
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 4.6e-10 69.7 80 38.8
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 7.8e-10 68.9 326 26.4
Sed0004092 Sechium edule HOM05D027220 ORTHO05D005382 7.8e-10 68.9 177 30.5
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 1.3e-09 68.2 88 40.9
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 1.3e-09 68.2 110 40.0
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 2.3e-09 67.4 100 35.0
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 2.3e-09 67.4 100 35.0
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 2.3e-09 67.4 75 42.7
ClCG09G004510 Citrullus lanatus HOM05D027220 ORTHO05D005382 3.0e-09 67.0 217 30.0
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 3.0e-09 67.0 75 44.0
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 3.0e-09 67.0 98 33.7
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 5.0e-09 66.2 84 39.3
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 6.6e-09 65.9 80 40.0
BcaB08g37272 Brassica carinata HOM05D006433 ORTHO05D005382 1.1e-08 65.1 71 49.3
AUR62017700 Chenopodium quinoa HOM05D006433 ORTHO05D005382 1.5e-08 64.7 88 39.8
HPP92_022556 Vanilla planifolia HOM05D006433 ORTHO05D005382 2.5e-08 63.9 126 34.1
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 3.3e-08 63.5 83 34.9
Oeu063832.1 Olea europaea HOM05D006433 ORTHO05D005382 3.3e-08 63.5 82 41.5
Aa31LG3G18330 Aethionema arabicum HOM05D006433 ORTHO05D005382 7.3e-08 62.4 85 38.8
SEGI_32645 Sequoiadendron giganteum HOM05D006433 ORTHO05D005382 7.3e-08 62.4 86 37.2
BcaNung05094 Brassica carinata HOM05D006433 ORTHO05D005382 9.5e-08 62.0 84 41.7
HPP92_022555 Vanilla planifolia HOM05D049803 ORTHO05D051563 1.6e-07 61.2 98 35.7
GSVIVG01012054001 Vitis vinifera HOM05D001185 ORTHO05D002551 1.6e-07 61.2 111 40.5
TAR624G0030 Trochodendron aralioides HOM05D008701 ORTHO05D010238 2.1e-07 60.8 90 35.6
TAR624G0398 Trochodendron aralioides HOM05D008701 ORTHO05D010238 2.1e-07 60.8 90 35.6
Aqoxy5G03711 Aquilegia oxysepala HOM05D006433 ORTHO05D005382 4.7e-07 59.7 82 37.8
A03p03690 Brassica napus HOM05D006433 ORTHO05D005382 4.7e-07 59.7 91 36.3
BraA03t09717Z Brassica rapa HOM05D006433 ORTHO05D005382 4.7e-07 59.7 91 36.3
DCAR_023460 Daucus carota HOM05D006433 ORTHO05D005382 4.7e-07 59.7 291 29.2
BcaB01g05621 Brassica carinata HOM05D006433 ORTHO05D005382 8.0e-07 58.9 91 36.3
BolC3t12950H Brassica oleracea HOM05D006433 ORTHO05D005382 8.0e-07 58.9 91 36.3
Sc06g0007710 Simmondsia chinensis HOM05D006433 ORTHO05D005382 1.1e-06 58.5 88 37.5
C03p04180 Brassica napus HOM05D006433 ORTHO05D005382 1.8e-06 57.8 91 36.3
Oeu013185.1 Olea europaea HOM05D006433 ORTHO05D005382 2.3e-06 57.4 87 40.2
COL.COLO4_06754 Corchorus olitorius HOM05D008701 ORTHO05D010238 3.1e-06 57.0 98 36.7
Manes.03G117800 Manihot esculenta HOM05D006433 ORTHO05D020383 4.0e-06 56.6 78 39.7
Manes.15G081600 Manihot esculenta HOM05D006433 ORTHO05D005382 4.0e-06 56.6 72 40.3
SEGI_06945 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 4.0e-06 56.6 79 36.7
Duzib052G1245 Durio zibethinus HOM05D008701 ORTHO05D010238 5.2e-06 56.2 93 34.4
Solyc02g014773.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 5.2e-06 56.2 52 51.9
HPP92_007311 Vanilla planifolia HOM05D049803 ORTHO05D051563 5.2e-06 56.2 73 39.7
HPP92_026032 Vanilla planifolia HOM05D006433 ORTHO05D005382 5.2e-06 56.2 89 37.1
MSTRG.13683 Avicennia marina HOM05D006433 ORTHO05D005382 6.8e-06 55.8 75 37.3
Rhsim06G0192100 Rhododendron simsii HOM05D012187 ORTHO05D021147 6.8e-06 55.8 77 40.3
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 8.9e-06 55.5 238 26.1
Ciclev10018089m.g Citrus clementina HOM05D008701 ORTHO05D010238 8.9e-06 55.5 135 28.9


User provided reference genes

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