Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2495 Punica granatum HOM05D004456 ORTHO05D005287 2.2e-64 248.8 126 100.0
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 4.7e-59 231.1 126 94.4
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 1.0e-58 229.9 126 93.7
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 1.2e-57 226.5 126 92.9
PGR073G0004 Punica granatum HOM05D004456 ORTHO05D005287 2.6e-57 225.3 126 92.1
PGR073G0005 Punica granatum HOM05D004456 ORTHO05D005287 2.6e-57 225.3 126 92.1
PGR142G0707 Punica granatum HOM05D004456 ORTHO05D005287 4.4e-57 224.6 126 91.3
PGR073G0001 Punica granatum HOM05D004456 ORTHO05D005287 1.3e-56 223.0 126 91.3
PGR142G0749 Punica granatum HOM05D004456 ORTHO05D005287 2.2e-56 222.2 125 91.2
PGR073G0006 Punica granatum HOM05D004456 ORTHO05D005287 2.9e-56 221.9 126 90.5
PGR087G0002 Punica granatum HOM05D004456 ORTHO05D005287 8.3e-56 220.3 126 90.5
PGR087G0004 Punica granatum HOM05D004456 ORTHO05D005287 8.3e-56 220.3 126 90.5
PGR142G1158 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-55 219.5 126 89.7
PGR142G0123 Punica granatum HOM05D004456 ORTHO05D005287 2.0e-54 215.7 124 89.5
PGR142G2513 Punica granatum HOM05D004456 ORTHO05D005287 2.0e-54 215.7 126 88.1
PGR142G2293 Punica granatum HOM05D004456 ORTHO05D005287 1.3e-53 213.0 126 87.3
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 1.7e-53 212.6 126 86.5
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 3.9e-53 211.5 126 84.9
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 8.6e-53 210.3 121 86.8
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 1.1e-52 209.9 121 86.8
arahy.Tifrunner.gnm1.ann1.PTU9AS Arachis hypogaea HOM05D004456 ORTHO05D005287 3.3e-52 208.4 121 87.6
arahy.Tifrunner.gnm1.ann1.VAHF8H Arachis hypogaea HOM05D004456 ORTHO05D005287 3.3e-52 208.4 121 87.6
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 7.3e-52 207.2 126 83.3
ClCG02G018700 Citrullus lanatus HOM05D004456 ORTHO05D005287 2.1e-51 205.7 118 88.1
MELO3C019631.2 Cucumis melo HOM05D004456 ORTHO05D005287 2.1e-51 205.7 118 88.1
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 2.1e-51 205.7 120 86.7
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 2.8e-51 205.3 120 85.8
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 2.8e-51 205.3 120 85.8
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 2.8e-51 205.3 120 85.8
Atru.chr8.947 Acer truncatum HOM05D004456 ORTHO05D005287 3.6e-51 204.9 126 81.7
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 3.6e-51 204.9 118 87.3
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 3.6e-51 204.9 121 86.0
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 1.0e-50 203.4 121 84.3
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 1.0e-50 203.4 126 82.5
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 1.0e-50 203.4 120 85.0
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 1.4e-50 203.0 126 83.3
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 1.4e-50 203.0 126 83.3
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 1.4e-50 203.0 120 85.0
Lalb_Chr10g0105771 Lupinus albus HOM05D004456 ORTHO05D005287 1.8e-50 202.6 121 85.1
Sed0010742 Sechium edule HOM05D004456 ORTHO05D005287 1.8e-50 202.6 118 87.3
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 2.3e-50 202.2 126 81.7
TAR374G0177 Trochodendron aralioides HOM05D004456 ORTHO05D005287 2.3e-50 202.2 126 82.5
Prupe.1G563700 Prunus persica HOM05D004456 ORTHO05D005287 3.1e-50 201.8 126 82.5
Prupe.4G128400 Prunus persica HOM05D004456 ORTHO05D005287 3.1e-50 201.8 126 82.5
LjContig00564g0013918 Lotus japonicus HOM05D004456 ORTHO05D005287 4.0e-50 201.4 121 83.5
TAR622G1262 Trochodendron aralioides HOM05D004456 ORTHO05D005287 4.0e-50 201.4 125 82.4
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 5.2e-50 201.1 126 81.7
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 5.2e-50 201.1 126 81.7
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 5.2e-50 201.1 126 82.5
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 6.8e-50 200.7 126 82.5
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 8.9e-50 200.3 126 81.0
Aqoxy3G00192 Aquilegia oxysepala HOM05D004456 ORTHO05D005287 1.5e-49 199.5 126 81.7
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 1.5e-49 199.5 126 82.5
Dinv05126 Davidia involucrata HOM05D004456 ORTHO05D005287 1.5e-49 199.5 126 81.0
THA.LOC104812342 Tarenaya hassleriana HOM05D004456 ORTHO05D005287 1.5e-49 199.5 121 83.5
Gohir.A11G319600 Gossypium hirsutum HOM05D004456 ORTHO05D005287 2.0e-49 199.1 126 81.0
Aa31LG7G1200 Aethionema arabicum HOM05D004456 ORTHO05D005287 4.4e-49 198.0 121 81.0
HanXRQChr03g0087831 Helianthus annuus HOM05D004456 ORTHO05D005287 5.8e-49 197.6 126 80.2
Solyc02g069840.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 7.5e-49 197.2 123 81.3
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 7.5e-49 197.2 123 81.3
ECA246G0212 Erigeron canadensis HOM05D004456 ORTHO05D005287 9.8e-49 196.8 126 80.2
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 9.8e-49 196.8 123 80.5
BcaC07g38811 Brassica carinata HOM05D004456 ORTHO05D005287 1.3e-48 196.4 121 80.2
A06p12700 Brassica napus HOM05D004456 ORTHO05D005287 1.3e-48 196.4 121 81.0
A08p31300 Brassica napus HOM05D004456 ORTHO05D005287 1.3e-48 196.4 121 80.2
C05p15000 Brassica napus HOM05D004456 ORTHO05D005287 1.3e-48 196.4 121 81.0
C08p17530 Brassica napus HOM05D004456 ORTHO05D005287 1.3e-48 196.4 121 80.2
BolC5t30215H Brassica oleracea HOM05D004456 ORTHO05D005287 1.3e-48 196.4 121 81.0
BolC8t49379H Brassica oleracea HOM05D004456 ORTHO05D005287 1.3e-48 196.4 121 80.2
BraA06t24430Z Brassica rapa HOM05D004456 ORTHO05D005287 1.3e-48 196.4 121 81.0
DCAR_003856 Daucus carota HOM05D004456 ORTHO05D005287 1.7e-48 196.1 126 80.2
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 2.2e-48 195.7 118 83.9
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 2.2e-48 195.7 123 81.3
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 2.9e-48 195.3 126 81.7
MD10G1216300 Malus domestica HOM05D004456 ORTHO05D005287 3.7e-48 194.9 126 80.2
CSS0000388 Camellia sinensis var. sinensis HOM05D004456 ORTHO05D005287 4.9e-48 194.5 118 85.6
Thhalv10009114m.g Eutrema salsugineum HOM05D004456 ORTHO05D005287 4.9e-48 194.5 121 80.2
HanXRQChr17g0543051 Helianthus annuus HOM05D004456 ORTHO05D005287 4.9e-48 194.5 123 79.7
Sp1g14890 Schrenkiella parvula HOM05D004456 ORTHO05D005287 4.9e-48 194.5 121 80.2
Oeu015180.1 Olea europaea HOM05D004456 ORTHO05D005287 6.4e-48 194.1 126 81.7
BcaB03g13034 Brassica carinata HOM05D004456 ORTHO05D005287 8.3e-48 193.7 121 80.2
BraA08t35053Z Brassica rapa HOM05D004456 ORTHO05D005287 8.3e-48 193.7 121 79.3
Nitab4.5_0004615g0060 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.1e-47 193.4 123 79.7
BcaB02g06679 Brassica carinata HOM05D004456 ORTHO05D005287 1.4e-47 193.0 119 80.7
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 1.4e-47 193.0 118 84.7
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 1.4e-47 193.0 118 84.7
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.4e-47 193.0 123 79.7
Actinidia13485 Actinidia chinensis HOM05D004456 ORTHO05D005287 1.9e-47 192.6 118 82.2
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 1.9e-47 192.6 126 78.6
Psat2g023600 Pisum sativum HOM05D004456 ORTHO05D005287 1.9e-47 192.6 120 82.5
CARHR017200 Cardamine hirsuta HOM05D004456 ORTHO05D005287 3.2e-47 191.8 121 79.3
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 3.2e-47 191.8 120 83.3
AT1G16740 Arabidopsis thaliana HOM05D004456 ORTHO05D005287 4.1e-47 191.4 121 79.3
Carub.0001s1648 Capsella rubella HOM05D004456 ORTHO05D005287 4.1e-47 191.4 121 79.3
Lsat_1_v5_gn_4_69821 Lactuca sativa HOM05D004456 ORTHO05D005287 5.4e-47 191.0 126 77.0
AL1G28910 Arabidopsis lyrata HOM05D004456 ORTHO05D005287 9.2e-47 190.3 121 78.5
MSTRG.14797 Avicennia marina HOM05D004456 ORTHO05D005287 9.2e-47 190.3 118 82.2
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 9.2e-47 190.3 124 79.0
MBI03_g42617_MAGBIO Magnolia biondii HOM05D004456 ORTHO05D005287 9.2e-47 190.3 126 80.2
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 9.2e-47 190.3 112 86.6
ATR0618G343 Amborella trichopoda HOM05D004456 ORTHO05D005287 1.2e-46 189.9 121 81.8
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 1.2e-46 189.9 123 81.3
Rhsim05G0148000 Rhododendron simsii HOM05D004456 ORTHO05D005287 1.2e-46 189.9 123 80.5
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 1.2e-46 189.9 121 80.2
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 1.2e-46 189.9 126 79.4
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 1.6e-46 189.5 118 82.2
Lsat_1_v5_gn_1_42081 Lactuca sativa HOM05D004456 ORTHO05D005287 2.0e-46 189.1 123 77.2
vmacro03444 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 2.0e-46 189.1 120 80.0
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 3.5e-46 188.3 126 79.4
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 4.6e-46 188.0 123 79.7
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 4.6e-46 188.0 123 80.5
FAN25G2185 Fragaria x ananassa HOM05D004456 ORTHO05D005287 6.0e-46 187.6 123 78.0
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 7.8e-46 187.2 112 84.8
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 1.0e-45 186.8 126 78.6
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 1.0e-45 186.8 123 77.2
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.0e-45 186.8 123 77.2
FAN16G3308 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.0e-45 186.8 123 77.2
PSO384G3508 Papaver somniferum HOM05D004456 ORTHO05D005287 1.0e-45 186.8 118 79.7
RcHm_v2.0_Chr5g0023421 Rosa chinensis HOM05D004456 ORTHO05D005287 1.0e-45 186.8 126 77.0
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 1.0e-45 186.8 123 78.0
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 1.3e-45 186.4 118 82.2
PSO339G5129 Papaver somniferum HOM05D004456 ORTHO05D005287 1.7e-45 186.0 118 79.7
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 2.3e-45 185.7 118 80.5
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 3.0e-45 185.3 123 79.7
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 3.0e-45 185.3 118 79.7
PGR142G3851 Punica granatum HOM05D004456 ORTHO05D005287 5.0e-45 184.5 110 87.3
FAN21G1444 Fragaria x ananassa HOM05D004456 ORTHO05D005287 6.6e-45 184.1 123 76.4
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 1.1e-44 183.3 110 85.5
AUR62005032 Chenopodium quinoa HOM05D004456 ORTHO05D005287 5.6e-44 181.0 121 77.7
EL10Ac4g09241 Beta vulgaris HOM05D004456 ORTHO05D005287 1.2e-43 179.9 121 77.7
AUR62000936 Chenopodium quinoa HOM05D004456 ORTHO05D005287 6.2e-43 177.6 121 76.9
Nn7g36646 Nelumbo nucifera HOM05D004456 ORTHO05D005287 2.3e-42 175.6 123 76.4
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 7.8e-38 160.6 106 77.4
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 1.0e-37 160.2 106 75.5
EL10Ac9g22335 Beta vulgaris HOM05D004456 ORTHO05D005287 1.8e-34 149.4 121 67.8
Peaxi162Scf00267g00035 Petunia axillaris HOM05D004456 ORTHO05D005287 1.8e-34 149.4 141 61.0
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 4.0e-34 148.3 115 65.2
AagrBONN_evm.TU.Sc2ySwM_228.5758 Anthoceros agrestis HOM05D004456 ORTHO05D005287 2.6e-33 145.6 104 71.2
Nitab4.5_0008405g0010 Nicotiana tabacum HOM05D004456 ORTHO05D005287 8.4e-32 140.6 85 85.9
MCO12G023 Micromonas commoda HOM05D004456 ORTHO05D005287 1.1e-28 130.2 100 67.0
AagrBONN_evm.TU.Sc2ySwM_368.929 Anthoceros agrestis HOM05D004456 ORTHO05D005287 2.8e-27 125.6 103 64.1
PRCOL_00003603 Prasinoderma coloniale HOM05D004456 ORTHO05D005287 2.4e-26 122.5 100 64.0
Cre01.g052350 Chlamydomonas reinhardtii HOM05D004456 ORTHO05D005287 9.3e-23 110.5 104 56.7
MD07G1169200 Malus domestica HOM05D004456 ORTHO05D005287 1.7e-21 106.3 105 58.1
QL06p000082 Quercus lobata HOM05D004456 ORTHO05D005287 1.7e-21 106.3 82 67.1
Zm00001eb154030 Zea mays HOM05D004456 ORTHO05D005287 3.0e-21 105.5 66 78.8
Cpa.g.sc4.119 Carica papaya HOM05D004456 ORTHO05D005287 5.1e-21 104.8 65 83.1
Nn1g08913 Nelumbo nucifera HOM05D004456 ORTHO05D005287 6.6e-21 104.4 61 86.9
SHI24418 Sapria himalayana HOM05D004456 ORTHO05D005287 1.6e-19 99.8 64 81.2
Potri.004G095475 Populus trichocarpa HOM05D004456 ORTHO05D005287 2.8e-19 99.0 59 79.7
SMO244G0037 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 3.6e-19 98.6 95 54.7
SMO281G0018 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 3.6e-19 98.6 95 54.7
SMO198G0083 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 4.8e-19 98.2 116 47.4
CBR_g49054 Chara braunii HOM05D004456 ORTHO05D005287 6.2e-19 97.8 63 76.2
QL06p000079 Quercus lobata HOM05D004456 ORTHO05D005287 1.8e-18 96.3 63 77.8
EL10Ac8g19692 Beta vulgaris HOM05D004456 ORTHO05D005287 3.2e-15 85.5 62 69.4
SHI24419 Sapria himalayana HOM05D004456 ORTHO05D005287 1.6e-14 83.2 53 75.5
Solyc09g055460.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 1.4e-10 70.1 45 73.3
EL10Ac8g19693 Beta vulgaris HOM05D004456 ORTHO05D005287 5.3e-10 68.2 38 84.2


User provided reference genes

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