Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 0.0e+00 1098.6 584 100.0
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 3.2e-158 562.8 588 52.0
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 6.0e-157 558.5 587 54.0
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 7.8e-157 558.1 590 50.3
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 3.3e-155 552.7 588 51.4
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 2.1e-154 550.1 593 52.1
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 3.7e-151 539.3 596 48.8
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 4.1e-150 535.8 584 52.4
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 5.4e-150 535.4 601 49.4
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 7.1e-150 535.0 609 53.2
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.2e-149 534.3 659 47.8
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.2e-149 534.3 590 50.8
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 2.7e-149 533.1 589 50.4
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 2.3e-148 530.0 594 50.2
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 3.9e-148 529.3 600 49.5
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 6.6e-148 528.5 593 51.1
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 6.6e-148 528.5 592 49.0
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 8.6e-148 528.1 591 48.2
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.9e-147 526.9 619 49.9
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 4.7e-146 522.3 593 48.7
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 1.1e-145 521.2 602 51.8
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.4e-145 520.8 587 51.8
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.6e-144 516.5 622 51.9
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 5.8e-144 515.4 604 48.5
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 1.1e-142 511.1 604 50.2
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 2.4e-142 510.0 611 50.4
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 3.2e-142 509.6 588 45.9
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 3.2e-142 509.6 588 48.0
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 9.2e-142 508.1 582 51.9
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 1.2e-141 507.7 591 49.2
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 1.0e-140 504.6 589 49.4
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 3.0e-140 503.1 582 49.8
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 3.9e-140 502.7 615 46.7
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-139 501.1 587 47.4
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 5.6e-139 498.8 588 48.0
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 9.6e-139 498.0 583 46.3
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.6e-138 497.3 611 51.7
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.6e-138 497.3 582 47.9
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 2.1e-138 496.9 593 47.0
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.7e-135 487.3 583 48.4
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 4.9e-135 485.7 616 49.8
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 5.4e-134 482.3 628 47.1
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 9.3e-134 481.5 582 47.3
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 9.3e-134 481.5 600 48.8
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.7e-133 479.9 588 45.6
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 7.8e-133 478.4 585 45.3
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 3.0e-132 476.5 583 47.9
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 3.0e-132 476.5 629 49.0
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 5.1e-132 475.7 586 46.2
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 3.3e-131 473.0 589 45.8
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.3e-131 472.6 478 52.1
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 9.6e-131 471.5 622 47.3
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 9.6e-131 471.5 622 47.3
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.8e-130 469.9 588 45.4
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.1e-129 468.0 661 44.3
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.8e-129 467.2 574 47.0
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 2.4e-129 466.8 584 48.8
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 6.9e-129 465.3 609 42.7
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 6.9e-129 465.3 640 44.1
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 3.4e-128 463.0 574 47.6
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 4.4e-128 462.6 578 48.3
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 9.9e-128 461.5 581 44.8
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 2.9e-127 459.9 665 42.6
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 3.8e-127 459.5 586 45.4
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 6.4e-127 458.8 578 47.8
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.4e-126 457.6 581 46.5
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 2.4e-126 456.8 597 44.7
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 3.5e-125 453.0 575 44.3
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 6.0e-125 452.2 596 44.1
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 7.9e-125 451.8 596 44.0
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 1.1e-123 448.0 592 46.6
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 1.5e-123 447.6 671 44.1
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.3e-123 446.4 461 51.0
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.3e-122 444.5 574 43.7
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 1.4e-121 441.0 607 47.0
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.4e-121 441.0 477 47.6
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 5.8e-120 435.6 487 46.4
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 2.9e-119 433.3 577 42.5
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 6.4e-119 432.2 590 48.0
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.1e-118 431.4 592 48.1
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 9.3e-118 428.3 582 43.5
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 9.3e-118 428.3 593 47.9
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 9.3e-118 428.3 618 46.4
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.2e-117 427.9 475 48.2
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.1e-117 427.2 582 44.2
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 2.7e-117 426.8 580 43.3
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 3.5e-117 426.4 476 47.1
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.0e-116 424.9 620 46.8
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 1.3e-116 424.5 490 48.2
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 1.8e-116 424.1 589 47.9
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.9e-115 420.6 430 53.3
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.2e-111 407.1 441 52.2
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 7.1e-110 402.1 621 41.5
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.7e-108 395.6 488 46.7
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.1e-106 390.6 586 44.0
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 1.7e-103 380.9 602 43.2
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.9e-103 380.2 596 42.1
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.3e-100 371.3 502 43.4
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 2.3e-100 370.5 587 39.5
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 3.9e-100 369.8 580 43.4
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 2.9e-95 353.6 593 39.3
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 5.9e-88 329.3 505 43.2
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.3e-87 328.2 505 39.6
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 6.5e-87 325.9 664 37.8
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.9e-86 324.3 431 42.2
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 3.2e-86 323.6 356 52.0
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.6e-85 320.1 582 37.1
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.8e-84 317.8 450 40.4
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.1e-81 308.5 357 48.5
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 8.5e-79 298.9 343 46.1
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 9.4e-78 295.4 433 37.9
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.4e-76 291.6 357 43.4
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 1.8e-76 291.2 399 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 9.7e-75 285.4 494 37.4
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.0e-64 251.1 437 37.1
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 3.5e-64 250.4 321 44.9
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 8.8e-60 235.7 270 52.2
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 3.4e-59 233.8 260 45.8
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.4e-59 233.8 245 53.9
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 5.7e-59 233.0 342 42.1
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 7.5e-59 232.6 246 51.6
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 7.7e-56 222.6 285 44.2
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 3.8e-55 220.3 275 47.3
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 9.5e-54 215.7 314 41.7
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.4e-52 211.8 237 51.1
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 2.3e-52 211.1 245 45.7
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 8.9e-52 209.1 250 46.8
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.0e-47 195.7 240 50.0
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.3e-47 195.3 307 40.4
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 6.4e-42 176.4 158 53.8
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.4e-41 175.3 263 49.4
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 2.4e-41 174.5 212 48.6
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.2e-41 174.1 330 36.1
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 8.6e-39 166.0 127 59.8
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 9.5e-38 162.5 415 34.2
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 8.1e-37 159.5 193 49.2
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.7e-34 150.6 164 52.4
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 4.9e-34 150.2 625 23.4
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.4e-33 147.9 181 50.3
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.2e-33 147.5 181 50.8
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 5.4e-33 146.7 162 50.0
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 5.4e-33 146.7 186 47.3
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.7e-32 144.4 181 49.7
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.5e-32 144.1 181 49.7
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.5e-32 144.1 181 49.7
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.5e-32 144.1 181 49.7
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 3.6e-29 134.0 219 41.1
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 6.2e-29 133.3 243 41.6
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 4.4e-27 127.1 145 49.7
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.3e-26 125.6 227 48.0
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 8.4e-26 122.9 118 53.4
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.6e-24 117.1 188 41.5
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.9e-23 114.0 205 52.2
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.1e-22 112.5 130 48.5
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.3e-22 110.5 170 42.4
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 8.1e-21 106.3 104 50.0
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-20 105.9 99 50.5
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 6.8e-20 103.2 104 48.1
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.0e-19 101.7 82 53.7
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 3.4e-19 100.9 151 40.4
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 3.5e-16 90.9 252 27.8
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 6.0e-16 90.1 197 49.2
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.3e-13 82.4 111 48.6
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 6.2e-13 80.1 90 46.7
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.1e-12 77.8 168 33.9
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 6.9e-12 76.6 45 75.6
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 2.0e-11 75.1 116 43.1
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.0e-11 75.1 69 50.7
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 4.4e-11 73.9 78 47.4
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 7.6e-11 73.2 273 33.0
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.4e-09 68.2 45 64.4
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.9e-07 60.8 47 57.4
PGSC0003DMG400007789 Solanum tuberosum HOM05D003812 ORTHO05D004393 3.9e-07 60.8 156 51.3
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 1.5e-06 58.9 70 40.0
vmacro06692 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.9e-06 58.5 53 62.3
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 5.6e-06 57.0 74 48.6
Glyma.01G161051 Glycine max HOM05D003812 ORTHO05D004393 5.6e-06 57.0 71 40.8


User provided reference genes

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