Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 5.7e-65 250.8 126 100.0
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 1.3e-64 249.6 126 99.2
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-63 246.1 126 98.4
PGR142G0749 Punica granatum HOM05D004456 ORTHO05D005287 2.7e-62 241.9 125 96.8
PGR073G0004 Punica granatum HOM05D004456 ORTHO05D005287 2.9e-61 238.4 126 96.0
PGR073G0005 Punica granatum HOM05D004456 ORTHO05D005287 2.9e-61 238.4 126 96.0
PGR073G0001 Punica granatum HOM05D004456 ORTHO05D005287 1.5e-60 236.1 126 95.2
PGR073G0006 Punica granatum HOM05D004456 ORTHO05D005287 3.3e-60 235.0 126 94.4
PGR087G0002 Punica granatum HOM05D004456 ORTHO05D005287 9.5e-60 233.4 126 94.4
PGR087G0004 Punica granatum HOM05D004456 ORTHO05D005287 9.5e-60 233.4 126 94.4
PGR142G1158 Punica granatum HOM05D004456 ORTHO05D005287 1.6e-59 232.6 126 93.7
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 2.1e-59 232.3 126 92.1
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 4.7e-59 231.1 126 89.7
PGR142G2495 Punica granatum HOM05D004456 ORTHO05D005287 6.1e-59 230.7 126 94.4
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 1.0e-58 229.9 121 92.6
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 1.4e-58 229.6 121 92.6
PGR142G0707 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-58 229.6 126 92.9
PGR142G0123 Punica granatum HOM05D004456 ORTHO05D005287 2.3e-58 228.8 124 93.5
PGR142G2513 Punica granatum HOM05D004456 ORTHO05D005287 2.3e-58 228.8 126 92.1
arahy.Tifrunner.gnm1.ann1.PTU9AS Arachis hypogaea HOM05D004456 ORTHO05D005287 4.0e-58 228.0 121 93.4
arahy.Tifrunner.gnm1.ann1.VAHF8H Arachis hypogaea HOM05D004456 ORTHO05D005287 4.0e-58 228.0 121 93.4
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 8.9e-58 226.9 126 88.9
PGR142G2293 Punica granatum HOM05D004456 ORTHO05D005287 1.5e-57 226.1 126 91.3
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 2.6e-57 225.3 120 92.5
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 3.4e-57 224.9 120 91.7
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 3.4e-57 224.9 120 91.7
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 3.4e-57 224.9 120 91.7
Atru.chr8.947 Acer truncatum HOM05D004456 ORTHO05D005287 4.4e-57 224.6 126 86.5
ClCG02G018700 Citrullus lanatus HOM05D004456 ORTHO05D005287 4.4e-57 224.6 118 93.2
MELO3C019631.2 Cucumis melo HOM05D004456 ORTHO05D005287 4.4e-57 224.6 118 93.2
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 4.4e-57 224.6 121 91.7
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 7.5e-57 223.8 118 92.4
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 1.3e-56 223.0 121 90.1
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 1.3e-56 223.0 120 90.8
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 1.7e-56 222.6 126 88.1
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 1.7e-56 222.6 126 88.1
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 1.7e-56 222.6 126 87.3
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 1.7e-56 222.6 120 90.8
Lalb_Chr10g0105771 Lupinus albus HOM05D004456 ORTHO05D005287 2.2e-56 222.2 121 90.9
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 2.9e-56 221.9 126 86.5
TAR374G0177 Trochodendron aralioides HOM05D004456 ORTHO05D005287 2.9e-56 221.9 126 87.3
Prupe.1G563700 Prunus persica HOM05D004456 ORTHO05D005287 3.7e-56 221.5 126 87.3
Prupe.4G128400 Prunus persica HOM05D004456 ORTHO05D005287 3.7e-56 221.5 126 87.3
Sed0010742 Sechium edule HOM05D004456 ORTHO05D005287 3.7e-56 221.5 118 92.4
LjContig00564g0013918 Lotus japonicus HOM05D004456 ORTHO05D005287 4.9e-56 221.1 121 88.4
TAR622G1262 Trochodendron aralioides HOM05D004456 ORTHO05D005287 4.9e-56 221.1 125 87.2
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 6.4e-56 220.7 126 86.5
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 6.4e-56 220.7 126 86.5
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 6.4e-56 220.7 126 87.3
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 8.3e-56 220.3 126 87.3
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 1.1e-55 219.9 126 85.7
Aqoxy3G00192 Aquilegia oxysepala HOM05D004456 ORTHO05D005287 1.8e-55 219.2 126 86.5
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 1.8e-55 219.2 126 87.3
Dinv05126 Davidia involucrata HOM05D004456 ORTHO05D005287 1.8e-55 219.2 126 85.7
Gohir.A11G319600 Gossypium hirsutum HOM05D004456 ORTHO05D005287 2.4e-55 218.8 126 85.7
THA.LOC104812342 Tarenaya hassleriana HOM05D004456 ORTHO05D005287 3.2e-55 218.4 121 87.6
Aa31LG7G1200 Aethionema arabicum HOM05D004456 ORTHO05D005287 5.4e-55 217.6 121 86.8
HanXRQChr03g0087831 Helianthus annuus HOM05D004456 ORTHO05D005287 7.0e-55 217.2 126 84.9
ECA246G0212 Erigeron canadensis HOM05D004456 ORTHO05D005287 1.2e-54 216.5 126 84.9
Solyc02g069840.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 1.2e-54 216.5 123 86.2
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 1.2e-54 216.5 123 86.2
BcaC07g38811 Brassica carinata HOM05D004456 ORTHO05D005287 1.6e-54 216.1 121 86.0
A08p31300 Brassica napus HOM05D004456 ORTHO05D005287 1.6e-54 216.1 121 86.0
C08p17530 Brassica napus HOM05D004456 ORTHO05D005287 1.6e-54 216.1 121 86.0
BolC8t49379H Brassica oleracea HOM05D004456 ORTHO05D005287 1.6e-54 216.1 121 86.0
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 1.6e-54 216.1 123 85.4
DCAR_003856 Daucus carota HOM05D004456 ORTHO05D005287 2.0e-54 215.7 126 84.9
A06p12700 Brassica napus HOM05D004456 ORTHO05D005287 2.7e-54 215.3 121 86.0
C05p15000 Brassica napus HOM05D004456 ORTHO05D005287 2.7e-54 215.3 121 86.0
BolC5t30215H Brassica oleracea HOM05D004456 ORTHO05D005287 2.7e-54 215.3 121 86.0
BraA06t24430Z Brassica rapa HOM05D004456 ORTHO05D005287 2.7e-54 215.3 121 86.0
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 3.5e-54 214.9 126 86.5
MD10G1216300 Malus domestica HOM05D004456 ORTHO05D005287 4.6e-54 214.5 126 84.9
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 4.6e-54 214.5 118 89.0
Thhalv10009114m.g Eutrema salsugineum HOM05D004456 ORTHO05D005287 5.9e-54 214.2 121 86.0
Sp1g14890 Schrenkiella parvula HOM05D004456 ORTHO05D005287 5.9e-54 214.2 121 86.0
HanXRQChr17g0543051 Helianthus annuus HOM05D004456 ORTHO05D005287 7.8e-54 213.8 123 84.6
Oeu015180.1 Olea europaea HOM05D004456 ORTHO05D005287 7.8e-54 213.8 126 86.5
BcaB03g13034 Brassica carinata HOM05D004456 ORTHO05D005287 1.0e-53 213.4 121 86.0
BraA08t35053Z Brassica rapa HOM05D004456 ORTHO05D005287 1.0e-53 213.4 121 85.1
CSS0000388 Camellia sinensis var. sinensis HOM05D004456 ORTHO05D005287 1.0e-53 213.4 118 90.7
Nitab4.5_0004615g0060 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.7e-53 212.6 123 84.6
BcaB02g06679 Brassica carinata HOM05D004456 ORTHO05D005287 2.3e-53 212.2 119 86.6
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 2.3e-53 212.2 126 83.3
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 2.3e-53 212.2 123 84.6
Psat2g023600 Pisum sativum HOM05D004456 ORTHO05D005287 2.3e-53 212.2 120 88.3
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 2.9e-53 211.8 118 89.8
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 2.9e-53 211.8 118 89.8
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 2.9e-53 211.8 123 85.4
Actinidia13485 Actinidia chinensis HOM05D004456 ORTHO05D005287 3.9e-53 211.5 118 87.3
CARHR017200 Cardamine hirsuta HOM05D004456 ORTHO05D005287 3.9e-53 211.5 121 85.1
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 3.9e-53 211.5 128 83.6
AT1G16740 Arabidopsis thaliana HOM05D004456 ORTHO05D005287 5.0e-53 211.1 121 85.1
Carub.0001s1648 Capsella rubella HOM05D004456 ORTHO05D005287 5.0e-53 211.1 121 85.1
Lsat_1_v5_gn_4_69821 Lactuca sativa HOM05D004456 ORTHO05D005287 6.6e-53 210.7 126 81.7
AL1G28910 Arabidopsis lyrata HOM05D004456 ORTHO05D005287 1.1e-52 209.9 121 84.3
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 1.5e-52 209.5 124 83.9
MBI03_g42617_MAGBIO Magnolia biondii HOM05D004456 ORTHO05D005287 1.5e-52 209.5 126 84.9
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 1.5e-52 209.5 121 86.0
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 1.5e-52 209.5 126 84.9
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 1.5e-52 209.5 112 92.0
MSTRG.14797 Avicennia marina HOM05D004456 ORTHO05D005287 1.9e-52 209.1 118 87.3
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 1.9e-52 209.1 123 86.2
Rhsim05G0148000 Rhododendron simsii HOM05D004456 ORTHO05D005287 1.9e-52 209.1 123 85.4
ATR0618G343 Amborella trichopoda HOM05D004456 ORTHO05D005287 2.5e-52 208.8 121 86.8
vmacro03444 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 2.5e-52 208.8 120 85.0
Lsat_1_v5_gn_1_42081 Lactuca sativa HOM05D004456 ORTHO05D005287 3.3e-52 208.4 123 82.1
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 3.3e-52 208.4 118 87.3
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 5.6e-52 207.6 126 84.1
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 7.3e-52 207.2 123 85.4
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 7.3e-52 207.2 123 85.4
FAN25G2185 Fragaria x ananassa HOM05D004456 ORTHO05D005287 9.5e-52 206.8 123 82.9
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 1.2e-51 206.5 112 90.2
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 1.6e-51 206.1 126 83.3
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 1.6e-51 206.1 123 82.1
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.6e-51 206.1 123 82.1
FAN16G3308 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.6e-51 206.1 123 82.1
RcHm_v2.0_Chr5g0023421 Rosa chinensis HOM05D004456 ORTHO05D005287 1.6e-51 206.1 126 81.7
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 1.6e-51 206.1 123 82.9
PSO384G3508 Papaver somniferum HOM05D004456 ORTHO05D005287 2.1e-51 205.7 118 84.7
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 2.8e-51 205.3 118 87.3
PSO339G5129 Papaver somniferum HOM05D004456 ORTHO05D005287 3.6e-51 204.9 118 84.7
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 4.7e-51 204.5 123 84.6
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 4.7e-51 204.5 118 85.6
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 6.2e-51 204.1 118 84.7
FAN21G1444 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.0e-50 203.4 123 81.3
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 1.8e-50 202.6 110 90.9
EL10Ac4g09241 Beta vulgaris HOM05D004456 ORTHO05D005287 1.5e-49 199.5 121 83.5
AUR62005032 Chenopodium quinoa HOM05D004456 ORTHO05D005287 1.5e-49 199.5 121 84.3
PGR142G3851 Punica granatum HOM05D004456 ORTHO05D005287 7.5e-49 197.2 110 90.9
AUR62000936 Chenopodium quinoa HOM05D004456 ORTHO05D005287 1.7e-48 196.1 121 83.5
Nn7g36646 Nelumbo nucifera HOM05D004456 ORTHO05D005287 2.4e-47 192.2 123 80.5
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 1.4e-42 176.4 106 82.1
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 1.8e-42 176.0 106 80.2
EL10Ac9g22335 Beta vulgaris HOM05D004456 ORTHO05D005287 1.4e-39 166.4 121 72.7
AagrBONN_evm.TU.Sc2ySwM_228.5758 Anthoceros agrestis HOM05D004456 ORTHO05D005287 2.1e-38 162.5 106 75.5
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 4.6e-38 161.4 115 68.7
Peaxi162Scf00267g00035 Petunia axillaris HOM05D004456 ORTHO05D005287 3.0e-37 158.7 141 63.1
Nitab4.5_0008405g0010 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.9e-36 156.0 85 91.8
MCO12G023 Micromonas commoda HOM05D004456 ORTHO05D005287 5.8e-33 144.4 100 71.0
AagrBONN_evm.TU.Sc2ySwM_368.929 Anthoceros agrestis HOM05D004456 ORTHO05D005287 1.1e-31 140.2 93 75.3
PRCOL_00003603 Prasinoderma coloniale HOM05D004456 ORTHO05D005287 4.6e-30 134.8 100 67.0
MD07G1169200 Malus domestica HOM05D004456 ORTHO05D005287 1.4e-26 123.2 106 62.3
Zm00001eb154030 Zea mays HOM05D004456 ORTHO05D005287 4.0e-26 121.7 67 85.1
Cre01.g052350 Chlamydomonas reinhardtii HOM05D004456 ORTHO05D005287 2.6e-25 119.0 104 58.7
Cpa.g.sc4.119 Carica papaya HOM05D004456 ORTHO05D005287 9.9e-25 117.1 65 89.2
Nn1g08913 Nelumbo nucifera HOM05D004456 ORTHO05D005287 1.3e-24 116.7 61 93.4
QL06p000082 Quercus lobata HOM05D004456 ORTHO05D005287 3.2e-23 112.1 82 69.5
SHI24418 Sapria himalayana HOM05D004456 ORTHO05D005287 3.2e-23 112.1 64 87.5
CBR_g49054 Chara braunii HOM05D004456 ORTHO05D005287 9.3e-23 110.5 63 82.5
QL06p000079 Quercus lobata HOM05D004456 ORTHO05D005287 2.7e-22 109.0 63 84.1
SMO244G0037 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 4.6e-22 108.2 95 56.8
SMO281G0018 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 4.6e-22 108.2 95 56.8
SMO198G0083 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 7.8e-22 107.5 116 50.0
Potri.004G095475 Populus trichocarpa HOM05D004456 ORTHO05D005287 2.3e-21 105.9 59 84.7
EL10Ac8g19692 Beta vulgaris HOM05D004456 ORTHO05D005287 2.6e-17 92.4 62 74.2
SHI24419 Sapria himalayana HOM05D004456 ORTHO05D005287 8.4e-16 87.4 53 77.4
Solyc09g055460.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 1.1e-10 70.5 50 66.0
EL10Ac8g19693 Beta vulgaris HOM05D004456 ORTHO05D005287 2.4e-10 69.3 39 84.6
Sed0026344 Sechium edule HOM05D007792 ORTHO05D009931 4.9e-08 61.6 89 38.2
Sed0027103 Sechium edule HOM05D007792 ORTHO05D009931 4.9e-08 61.6 89 38.2
MELO3C027088.2 Cucumis melo HOM05D007792 ORTHO05D009931 6.4e-08 61.2 89 38.2
MELO3C028023.2 Cucumis melo HOM05D007792 ORTHO05D009931 6.4e-08 61.2 89 38.2
Gohir.A12G229400 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.1e-07 60.5 89 39.3
PGR111G0084 Punica granatum HOM05D007792 ORTHO05D009931 1.1e-07 60.5 89 39.3
Gohir.D01G101995 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.4e-07 60.1 89 39.3
Gohir.A11G230404 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.9e-07 59.7 88 39.8
Gohir.D09G044333 Gossypium hirsutum HOM05D007792 ORTHO05D009931 2.4e-07 59.3 88 39.8
MELO3C028123.2 Cucumis melo HOM05D007792 ORTHO05D009931 3.2e-07 58.9 79 40.5
LjContig00318g0025275 Lotus japonicus HOM05D007792 ORTHO05D009931 3.2e-07 58.9 93 35.5
AL2G21630 Arabidopsis lyrata HOM05D007792 ORTHO05D009931 1.2e-06 57.0 89 37.1
ATCG00660 Arabidopsis thaliana HOM05D007792 ORTHO05D009931 1.2e-06 57.0 89 37.1
CARHR282170 Cardamine hirsuta HOM05D007792 ORTHO05D009931 1.2e-06 57.0 89 37.1
Phvul.002G090500 Phaseolus vulgaris HOM05D007792 ORTHO05D009931 1.6e-06 56.6 90 36.7
DCAR_032507 Daucus carota HOM05D007792 ORTHO05D009931 2.1e-06 56.2 89 37.1
RcHm_v2.0_CPg0502001 Rosa chinensis HOM05D007792 ORTHO05D009931 2.1e-06 56.2 89 37.1
CAN.G1148.9 Capsicum annuum HOM05D007792 ORTHO05D009931 2.7e-06 55.8 89 37.1
CAN.G2018.13 Capsicum annuum HOM05D007792 ORTHO05D009931 2.7e-06 55.8 89 37.1
CAN.G438.83 Capsicum annuum HOM05D007792 ORTHO05D009931 2.7e-06 55.8 89 37.1
Oeu053978.1 Olea europaea HOM05D007792 ORTHO05D009931 3.5e-06 55.5 89 36.0
PSO548G0123 Papaver somniferum HOM05D007792 ORTHO05D009931 3.5e-06 55.5 89 37.1
Oeu028775.1 Olea europaea HOM05D007792 ORTHO05D009931 4.6e-06 55.1 89 36.0
Oeu058366.1 Olea europaea HOM05D007792 ORTHO05D009931 4.6e-06 55.1 89 36.0
EL10Ac8g19560 Beta vulgaris HOM05D004456 ORTHO05D005287 6.0e-06 54.7 30 83.3
Sed0001088 Sechium edule HOM05D007792 ORTHO05D009931 6.0e-06 54.7 87 35.6
Nn021s41529 Nelumbo nucifera HOM05D007792 ORTHO05D009931 7.9e-06 54.3 92 35.9


User provided reference genes

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