Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 5.2e-226 787.3 388 100.0
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.9e-135 486.5 387 61.2
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 5.4e-130 468.4 388 59.8
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 1.2e-129 467.2 388 59.8
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 2.0e-129 466.5 391 60.1
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 5.0e-128 461.8 392 58.7
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 6.6e-128 461.5 388 59.3
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 9.5e-127 457.6 390 57.9
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 2.8e-126 456.1 408 56.6
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.1e-125 454.1 393 59.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 1.1e-125 454.1 388 57.5
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.4e-124 448.7 388 56.4
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 6.4e-123 444.9 388 56.7
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.4e-122 443.7 382 59.2
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 3.2e-122 442.6 389 57.1
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 3.0e-120 436.0 389 56.3
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 5.1e-120 435.3 384 56.8
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 6.6e-120 434.9 390 55.4
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 8.6e-120 434.5 359 59.9
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.5e-119 433.7 359 59.9
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 6.2e-118 428.3 394 55.1
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.1e-117 427.6 394 56.9
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 5.2e-117 425.2 394 55.6
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 4.4e-116 422.2 393 56.0
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 7.5e-116 421.4 390 55.1
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 2.2e-115 419.9 389 54.2
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.9e-115 419.5 448 49.6
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 3.2e-114 416.0 392 54.1
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 4.1e-114 415.6 392 54.6
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.2e-113 414.1 389 52.7
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.2e-113 414.1 389 54.2
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 3.9e-112 409.1 390 54.9
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 3.3e-111 406.0 382 52.4
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 3.3e-111 406.0 330 58.8
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 2.1e-110 403.3 387 53.5
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 3.6e-110 402.5 397 52.6
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.7e-110 402.1 388 52.6
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.4e-108 396.0 388 53.1
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.2e-107 393.3 454 46.9
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.9e-106 390.2 367 55.3
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.4e-106 389.8 388 53.4
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 7.1e-106 388.3 386 52.8
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 6.0e-105 385.2 337 56.1
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 1.3e-104 384.0 376 52.4
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.0e-104 382.9 415 47.0
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 3.3e-103 379.4 405 50.6
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 1.3e-102 377.5 502 43.8
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.6e-102 377.1 390 47.9
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.8e-102 376.3 389 49.1
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.8e-102 375.6 395 48.9
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 2.4e-101 373.2 384 51.3
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.0e-101 372.5 388 50.0
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 5.3e-101 372.1 400 47.2
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 1.7e-99 367.1 396 47.5
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 1.1e-98 364.4 380 48.2
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 2.4e-98 363.2 407 49.9
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.6e-97 360.5 390 49.0
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 8.1e-94 348.2 286 62.2
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 1.5e-92 344.0 393 48.6
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.2e-91 340.1 389 47.8
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.4e-90 337.4 370 47.8
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 3.2e-90 336.3 393 48.1
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 2.7e-89 333.2 371 46.4
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.9e-88 329.3 312 53.5
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 5.1e-88 328.9 372 46.5
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.7e-88 328.6 284 57.7
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 8.7e-88 328.2 372 45.7
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 8.7e-88 328.2 372 45.7
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.9e-87 327.0 392 45.2
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.6e-86 323.9 372 45.2
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.9e-85 318.5 419 42.0
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.0e-83 314.7 386 44.6
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 1.1e-82 311.2 288 56.2
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 4.6e-81 305.8 286 55.9
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.6e-78 297.4 357 44.3
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 2.4e-77 293.5 368 45.7
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.0e-75 288.1 318 49.4
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.0e-75 288.1 271 54.6
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.4e-74 284.3 285 51.2
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.9e-74 283.9 212 64.6
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 4.2e-74 282.7 282 51.1
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 2.7e-73 280.0 389 40.1
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 4.3e-71 272.7 215 61.4
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 5.7e-71 272.3 287 51.6
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 9.7e-71 271.6 379 42.7
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 2.2e-70 270.4 257 57.2
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.0e-68 263.8 256 54.3
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 3.4e-68 263.1 294 47.3
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.0e-67 261.5 273 52.7
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 5.0e-67 259.2 244 57.4
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.6e-65 254.2 245 56.3
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 3.6e-65 253.1 245 55.9
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 6.7e-64 248.8 285 46.3
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.1e-63 248.1 262 48.5
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 7.4e-63 245.4 265 47.5
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 1.2e-60 238.0 243 54.3
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 2.2e-59 233.8 271 47.6
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.8e-59 233.0 295 42.4
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 3.8e-59 233.0 254 48.8
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.4e-58 231.1 242 55.0
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.6e-57 227.6 254 48.8
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.6e-57 227.6 254 48.0
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 4.7e-57 226.1 254 52.0
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 7.9e-57 225.3 254 50.0
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 7.9e-57 225.3 254 50.0
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.0e-56 224.9 245 52.2
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.3e-56 223.8 242 54.1
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 3.0e-56 223.4 254 48.4
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 8.8e-56 221.9 264 47.3
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.1e-55 221.5 253 47.8
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.7e-54 217.6 253 47.8
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.1e-53 214.9 266 46.2
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.8e-53 214.2 254 48.4
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.8e-53 214.2 253 48.2
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.8e-53 214.2 302 44.0
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 3.1e-53 213.4 266 46.2
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 9.1e-53 211.8 181 53.0
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 9.1e-53 211.8 253 46.6
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.0e-52 210.7 254 44.9
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 3.5e-52 209.9 277 41.9
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.7e-51 207.6 266 45.5
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.2e-51 207.2 266 45.1
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 8.0e-49 198.7 204 53.4
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 8.8e-48 195.3 214 49.5
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 1.1e-47 194.9 215 48.8
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.0e-47 194.1 270 43.7
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.2e-42 176.8 203 47.8
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 2.6e-39 167.2 278 36.3
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 1.7e-38 164.5 135 58.5
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 9.1e-37 158.7 314 32.8
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 5.9e-36 156.0 216 38.9
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 7.7e-36 155.6 154 53.2
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.5e-31 141.4 174 43.7
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 2.8e-30 137.1 155 48.4
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 6.3e-30 136.0 244 33.6
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 3.5e-28 130.2 289 32.2
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 5.0e-27 126.3 72 77.8
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.1e-26 125.2 168 43.5
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 4.7e-25 119.8 177 42.4
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 4.4e-23 113.2 64 73.4
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 2.9e-19 100.5 76 63.2
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.6e-17 94.7 122 45.1
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 8.0e-17 92.4 124 43.5
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 9.2e-13 79.0 122 40.2
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 7.8e-12 75.9 177 31.6
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 3.3e-10 70.5 52 63.5
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.6e-09 68.2 131 35.9
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 1.6e-09 68.2 83 47.0
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 2.8e-09 67.4 116 35.3
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 3.4e-07 60.5 81 35.8
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 3.4e-07 60.5 82 35.4


User provided reference genes

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