Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 3.8e-100 368.2 192 100.0
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 1.8e-41 173.3 152 55.9
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.3e-41 172.9 192 50.0
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 3.9e-41 172.2 142 60.6
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 6.7e-41 171.4 156 57.7
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 3.3e-40 169.1 192 47.9
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 4.4e-40 168.7 193 50.3
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 5.7e-40 168.3 164 54.9
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 9.7e-40 167.5 193 47.2
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.2e-39 166.4 153 56.9
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 3.7e-39 165.6 189 50.8
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 4.8e-39 165.2 172 52.3
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 8.2e-39 164.5 153 52.9
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.1e-38 164.1 150 54.7
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.1e-38 164.1 150 54.7
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.6e-37 159.5 181 48.6
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 4.5e-37 158.7 190 49.5
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 1.3e-36 157.1 149 55.0
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 3.8e-36 155.6 159 51.6
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 1.9e-35 153.3 151 52.3
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 4.2e-35 152.1 170 47.6
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.7e-34 149.4 148 52.0
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 9.7e-32 141.0 135 52.6
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-31 140.6 146 48.6
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 4.8e-31 138.7 135 50.4
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 8.2e-31 137.9 143 50.3
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 1.4e-30 137.1 143 49.7
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 2.4e-30 136.3 143 49.0
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 2.4e-30 136.3 143 49.0
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 4.1e-30 135.6 132 53.0
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 9.1e-30 134.4 143 49.0
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 9.1e-30 134.4 143 48.3
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 2.0e-29 133.3 143 47.6
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 3.5e-29 132.5 152 48.0
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 3.5e-29 132.5 156 48.1
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 4.5e-29 132.1 135 49.6
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 4.5e-29 132.1 135 49.6
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 5.9e-29 131.7 145 47.6
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.0e-28 131.0 149 45.6
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.0e-28 131.0 148 46.6
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.0e-28 131.0 182 42.3
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.3e-28 130.6 141 49.6
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 1.3e-28 130.6 144 43.8
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.8e-28 129.0 169 44.4
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 3.8e-28 129.0 135 48.9
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 5.0e-28 128.6 145 47.6
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 2.5e-27 126.3 142 49.3
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 5.5e-27 125.2 146 42.5
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 9.4e-27 124.4 138 44.9
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 9.4e-27 124.4 138 45.7
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.2e-26 124.0 145 44.1
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 4.7e-26 122.1 157 43.9
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 4.7e-26 122.1 157 43.9
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 8.0e-26 121.3 170 41.2
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.0e-25 120.9 156 44.2
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.0e-25 120.9 157 43.9
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.0e-25 120.9 157 43.9
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 1.0e-25 120.9 144 47.2
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 7.5e-24 114.8 120 50.0
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 2.8e-23 112.8 141 39.7
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 2.8e-23 112.8 141 39.7
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.7e-23 112.5 130 44.6
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 6.3e-23 111.7 153 45.1
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.8e-22 110.2 150 36.7
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.8e-22 110.2 163 38.0
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 4.1e-22 109.0 117 46.2
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 4.1e-22 109.0 139 38.8
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.0e-22 108.2 130 44.6
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.7e-21 106.3 115 49.6
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 4.5e-21 105.5 124 44.4
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 7.7e-21 104.8 150 34.7
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-20 104.0 170 37.1
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 6.6e-20 101.7 165 36.4
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 6.6e-20 101.7 154 35.7
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 1.1e-19 100.9 166 36.1
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 1.1e-19 100.9 144 36.8
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.9e-19 100.1 144 36.8
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 2.5e-19 99.8 156 35.3
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 2.5e-19 99.8 144 38.2
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 2.5e-19 99.8 144 38.2
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 2.5e-19 99.8 146 37.7
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 3.3e-19 99.4 154 37.7
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.3e-19 99.4 153 35.3
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 4.2e-19 99.0 144 36.1
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 4.2e-19 99.0 143 37.1
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 4.2e-19 99.0 145 37.2
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 5.5e-19 98.6 146 40.4
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 5.5e-19 98.6 141 36.2
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 7.2e-19 98.2 143 38.5
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 9.5e-19 97.8 132 37.9
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.2e-18 97.4 145 35.9
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-18 97.4 92 50.0
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-18 97.4 144 36.8
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 1.2e-18 97.4 150 34.7
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 1.6e-18 97.1 147 35.4
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.6e-18 97.1 142 35.9
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 1.6e-18 97.1 144 36.1
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 2.1e-18 96.7 144 36.1
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 2.8e-18 96.3 145 35.2
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 2.8e-18 96.3 144 36.1
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 2.8e-18 96.3 144 36.1
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 2.8e-18 96.3 148 33.8
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 2.8e-18 96.3 143 35.0
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 4.7e-18 95.5 127 40.9
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 6.1e-18 95.1 152 36.2
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 6.1e-18 95.1 127 37.8
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 8.0e-18 94.7 149 34.9
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 8.0e-18 94.7 123 41.5
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 8.0e-18 94.7 129 39.5
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 8.0e-18 94.7 127 39.4
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 1.0e-17 94.4 148 34.5
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 1.0e-17 94.4 94 47.9
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.0e-17 94.4 152 36.2
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 1.4e-17 94.0 144 36.8
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 1.4e-17 94.0 129 38.0
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.4e-17 94.0 152 34.2
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.4e-17 94.0 161 32.3
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.4e-17 94.0 143 36.4
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.4e-17 94.0 123 40.7
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 1.4e-17 94.0 144 36.1
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.8e-17 93.6 150 36.0
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.8e-17 93.6 166 34.3
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.8e-17 93.6 165 33.9
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 1.8e-17 93.6 164 34.1
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 2.3e-17 93.2 143 37.1
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 2.3e-17 93.2 128 42.2
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 4.0e-17 92.4 139 36.0
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 5.2e-17 92.0 159 32.1
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 6.8e-17 91.7 127 37.8
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 6.8e-17 91.7 100 50.0
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 6.8e-17 91.7 135 38.5
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 8.9e-17 91.3 139 37.4
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.2e-16 90.9 126 41.3
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 1.2e-16 90.9 123 39.8
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.5e-16 90.5 143 36.4
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 2.0e-16 90.1 127 37.8
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.6e-16 89.7 129 34.1
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 3.4e-16 89.4 127 37.0
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 3.4e-16 89.4 148 33.8
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 4.4e-16 89.0 141 34.0
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 5.7e-16 88.6 146 32.2
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 5.7e-16 88.6 159 31.4
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 7.5e-16 88.2 146 33.6
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 9.8e-16 87.8 149 34.2
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.3e-15 87.4 127 36.2
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 1.3e-15 87.4 125 39.2
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 2.8e-15 86.3 132 35.6
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.8e-15 86.3 130 35.4
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 2.8e-15 86.3 166 33.1
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 1.1e-14 84.3 105 41.9
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 1.4e-14 84.0 148 34.5
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 9.2e-14 81.3 139 34.5
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 3.5e-13 79.3 133 37.6
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 6.1e-10 68.6 93 36.6
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.1e-09 66.2 119 35.3
Haze_12995 Corylus avellana HOM05D007205 ORTHO05D009175 1.2e-08 64.3 145 30.3
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.0e-08 63.5 57 45.6
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 3.4e-08 62.8 134 29.9
Cfa014480 Carpinus fangiana HOM05D007205 ORTHO05D009175 2.9e-07 59.7 145 29.7
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.7e-07 59.3 83 32.5
FAN02G2952 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.9e-06 57.0 71 47.9
Nn5g28818 Nelumbo nucifera HOM05D007205 ORTHO05D009175 1.9e-06 57.0 143 27.3
ClCG02G001450 Citrullus lanatus HOM05D007205 ORTHO05D009175 2.4e-06 56.6 135 28.9
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 4.1e-06 55.8 172 26.2
CANSAT64G0219 Cannabis sativa HOM05D007205 ORTHO05D009175 4.1e-06 55.8 113 27.4
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 5.4e-06 55.5 122 28.7
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 7.0e-06 55.1 187 26.7
BcaC03g17870 Brassica carinata HOM05D011290 ORTHO05D010021 9.2e-06 54.7 57 45.6
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 9.2e-06 54.7 150 27.3


User provided reference genes

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