Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 4.3e-189 666.0 957 100.0
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 3.6e-58 231.1 859 66.5
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 3.0e-41 174.9 511 47.6
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 1.7e-39 169.1 520 46.2
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 8.3e-39 166.8 846 61.0
CSS0048267 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 4.1e-38 164.5 463 65.2
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 1.2e-37 162.9 512 52.3
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 1.6e-37 162.5 790 60.4
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 1.5e-35 156.0 433 63.5
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 3.3e-35 154.8 143 53.8
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 3.6e-34 151.4 790 52.8
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 6.1e-34 150.6 862 59.2
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 3.0e-33 148.3 813 55.7
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 4.0e-33 147.9 145 51.7
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 8.9e-33 146.7 511 60.5
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 2.8e-31 141.7 140 52.1
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 1.8e-30 139.0 140 50.0
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 2.4e-30 138.7 526 49.4
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 7.0e-30 137.1 507 58.6
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 1.2e-29 136.3 152 45.4
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 5.9e-29 134.0 140 49.3
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 1.0e-28 133.3 844 53.3
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 1.9e-27 129.0 143 42.7
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 7.3e-27 127.1 144 45.1
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 9.5e-27 126.7 500 53.2
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 1.2e-26 126.3 150 42.0
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 3.6e-26 124.8 146 47.3
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.6e-26 124.8 127 48.8
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 1.0e-25 123.2 146 47.3
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 4.0e-25 121.3 125 50.4
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 4.0e-25 121.3 154 43.5
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 4.0e-25 121.3 154 43.5
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 8.9e-25 120.2 154 42.9
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 1.2e-24 119.8 131 45.8
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 2.6e-24 118.6 117 50.4
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 2.6e-24 118.6 146 45.2
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 9.8e-24 116.7 144 43.1
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 9.8e-24 116.7 158 43.0
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 9.8e-24 116.7 152 42.8
Aqoxy6G00092 Aquilegia oxysepala HOM05D003975 ORTHO05D009762 2.2e-23 115.5 149 43.0
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 2.9e-23 115.2 143 44.1
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.7e-23 114.8 117 48.7
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 1.8e-22 112.5 147 42.9
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 5.4e-22 110.9 143 40.6
CSS0004960 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 7.0e-22 110.5 119 48.7
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 2.0e-21 109.0 147 42.9
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 2.7e-21 108.6 143 39.2
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 7.8e-21 107.1 153 41.2
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 1.3e-20 106.3 153 41.8
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-20 106.3 120 48.3
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-20 106.3 120 48.3
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-20 106.3 120 48.3
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-20 106.3 120 48.3
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-20 106.3 120 48.3
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-20 106.3 120 48.3
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-20 106.3 120 48.3
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-20 106.3 120 48.3
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 1.7e-20 105.9 149 40.3
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 1.7e-20 105.9 142 38.7
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 3.0e-20 105.1 153 42.5
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 3.0e-20 105.1 153 42.5
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 5.0e-20 104.4 140 42.1
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 5.0e-20 104.4 146 41.1
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 5.0e-20 104.4 120 47.5
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 6.6e-20 104.0 425 64.9
BcaNung03570 Brassica carinata HOM05D003975 ORTHO05D009762 8.6e-20 103.6 153 42.5
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 8.6e-20 103.6 102 52.9
CsaV3_3G016180 Cucumis sativus L. HOM05D003975 ORTHO05D009762 8.6e-20 103.6 116 47.4
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 8.6e-20 103.6 122 46.7
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 2.5e-19 102.1 120 47.5
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 2.8e-18 98.6 124 40.3
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 2.8e-18 98.6 141 41.1
Peaxi162Scf00241g00015 Petunia axillaris HOM05D003975 ORTHO05D009762 5.2e-17 94.4 119 44.5
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 2.0e-16 92.4 152 38.2
BcaNung03569 Brassica carinata HOM05D003975 ORTHO05D009762 2.2e-15 89.0 451 53.9
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 2.2e-15 89.0 440 39.8
Nitab4.5_0002556g0070 Nicotiana tabacum HOM05D003975 ORTHO05D009762 6.6e-12 77.4 102 43.1
Oeu023215.2 Olea europaea HOM05D003975 ORTHO05D009762 8.6e-12 77.0 120 39.2
Nitab4.5_0005512g0030 Nicotiana tabacum HOM05D000508 ORTHO05D000371 7.3e-11 73.9 52 63.5
CSS0005035 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 6.2e-10 70.9 46 60.9
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 6.8e-09 67.4 114 33.3
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 1.5e-08 66.2 114 31.6


User provided reference genes

Program Settings