Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 1.9e-131 473.0 339 100.0
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 9.7e-59 231.5 275 80.4
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 1.4e-46 191.0 310 65.2
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 1.9e-46 190.7 310 65.2
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 2.6e-43 180.3 293 68.3
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 4.8e-42 176.0 296 66.6
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 9.1e-41 171.8 294 67.0
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 1.6e-40 171.0 340 60.9
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 7.7e-40 168.7 340 59.7
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 7.7e-40 168.7 298 66.1
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 2.2e-39 167.2 328 62.5
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 3.8e-39 166.4 283 55.5
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 5.0e-39 166.0 276 69.6
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 6.5e-39 165.6 293 65.5
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 6.5e-39 165.6 293 65.5
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 8.5e-39 165.2 341 59.5
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 8.5e-39 165.2 356 57.0
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.9e-38 164.1 293 65.5
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 2.5e-38 163.7 271 70.5
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 9.4e-38 161.8 316 60.8
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.2e-37 161.4 235 76.2
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 1.6e-37 161.0 300 66.0
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 1.6e-37 161.0 405 53.6
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 2.1e-37 160.6 272 65.8
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 3.6e-37 159.8 237 70.5
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 4.7e-37 159.5 286 64.0
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.1e-37 159.1 280 66.8
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 8.0e-37 158.7 281 69.4
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 1.0e-36 158.3 235 77.0
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.4e-36 157.9 300 65.7
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 1.8e-36 157.5 288 64.6
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 2.3e-36 157.1 288 59.4
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 2.3e-36 157.1 237 72.2
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 3.0e-36 156.8 233 79.4
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 3.0e-36 156.8 275 64.4
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 4.0e-36 156.4 300 59.7
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 5.2e-36 156.0 306 60.8
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 1.2e-35 154.8 313 63.3
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 1.5e-35 154.5 236 72.5
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 2.0e-35 154.1 294 58.2
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 2.0e-35 154.1 288 62.8
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 2.0e-35 154.1 237 72.6
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 2.6e-35 153.7 282 69.1
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 3.3e-35 153.3 275 62.2
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 9.7e-35 151.8 300 62.3
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 1.3e-34 151.4 330 57.6
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 1.3e-34 151.4 235 72.3
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 2.2e-34 150.6 312 60.6
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 3.7e-34 149.8 302 64.2
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 3.7e-34 149.8 288 64.2
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 4.8e-34 149.4 330 57.0
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 6.3e-34 149.1 235 73.6
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 8.3e-34 148.7 300 49.7
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 1.1e-33 148.3 281 64.4
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 1.1e-33 148.3 331 55.6
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 1.1e-33 148.3 241 70.1
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 1.1e-33 148.3 274 58.8
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 1.8e-33 147.5 305 61.0
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 3.1e-33 146.7 284 63.4
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 3.1e-33 146.7 294 65.3
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 4.1e-33 146.4 335 56.7
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 5.3e-33 146.0 281 64.8
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 7.0e-33 145.6 281 63.3
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 1.6e-32 144.4 284 63.4
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 1.6e-32 144.4 291 64.9
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 2.0e-32 144.1 235 71.5
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.3e-31 141.4 225 76.0
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 2.2e-31 140.6 293 63.8
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 3.8e-31 139.8 329 55.3
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 3.8e-31 139.8 236 74.6
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 3.8e-31 139.8 318 44.7
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 6.5e-31 139.0 327 58.7
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.1e-30 138.3 305 53.4
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 1.5e-30 137.9 189 86.2
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 2.5e-30 137.1 375 52.8
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 3.2e-30 136.7 235 71.1
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 3.2e-30 136.7 250 62.4
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 4.2e-30 136.3 168 52.4
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 5.5e-30 136.0 286 60.1
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 9.4e-30 135.2 313 54.3
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 4.7e-29 132.9 235 71.9
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 4.7e-29 132.9 235 68.9
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 4.7e-29 132.9 317 60.3
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 6.1e-29 132.5 189 82.0
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 8.0e-29 132.1 299 60.2
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 8.0e-29 132.1 187 82.9
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 1.0e-28 131.7 282 46.8
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 1.4e-28 131.3 195 79.0
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 1.8e-28 131.0 203 71.9
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 4.0e-28 129.8 189 79.4
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 4.0e-28 129.8 308 55.5
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 1.5e-27 127.9 312 60.3
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 1.5e-27 127.9 311 60.5
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 5.7e-27 125.9 241 68.5
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 5.7e-27 125.9 379 50.7
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 1.8e-25 120.9 280 63.9
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 3.1e-25 120.2 269 64.7
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 4.1e-25 119.8 163 46.6
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.2e-24 118.2 196 41.3
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 2.0e-24 117.5 283 62.2
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 3.8e-23 113.2 280 61.8
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.0e-23 112.8 110 58.2
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 6.6e-23 112.5 317 58.4
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 5.5e-22 109.4 274 44.9
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.2e-21 108.2 58 87.9
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 1.2e-21 108.2 243 65.8
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 2.1e-21 107.5 144 49.3
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 4.0e-20 103.2 349 53.9
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 4.0e-20 103.2 294 29.6
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.6e-19 100.5 104 53.8
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 5.7e-19 99.4 176 40.3
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.3e-18 98.2 172 58.1
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 4.9e-18 96.3 220 67.3
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 7.0e-17 92.4 103 52.4
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 1.2e-11 75.1 63 52.4
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 3.4e-11 73.6 36 94.4
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 3.4e-11 73.6 61 54.1
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 4.4e-11 73.2 63 52.4
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 1.9e-09 67.8 64 51.6
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 1.9e-09 67.8 64 51.6
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 4.1e-09 66.6 63 49.2
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.2e-09 65.5 61 49.2
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 9.2e-09 65.5 61 50.8
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 2.0e-08 64.3 149 82.6
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 2.0e-08 64.3 63 44.4
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 3.5e-08 63.5 75 45.3
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 4.6e-08 63.2 146 74.7
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 4.6e-08 63.2 61 44.3
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 7.8e-08 62.4 61 47.5
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.3e-07 61.6 63 44.4
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 1.7e-07 61.2 43 69.8
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 1.7e-07 61.2 63 46.0
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 2.3e-07 60.8 61 45.9
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.3e-07 60.8 61 45.9
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 2.3e-07 60.8 105 38.1
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 2.3e-07 60.8 63 42.9
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 6.6e-07 59.3 62 46.8
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 6.6e-07 59.3 64 42.2
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.9e-06 57.8 102 35.3
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 2.5e-06 57.4 62 43.5
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 4.3e-06 56.6 48 50.0
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 7.3e-06 55.8 131 31.3


User provided reference genes

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