Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 5.5e-150 534.3 266 100.0
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 1.4e-92 343.6 196 83.2
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 6.4e-90 334.7 201 77.1
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 1.1e-89 334.0 224 70.1
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 7.0e-89 331.3 211 73.9
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 9.2e-89 330.9 223 69.5
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.7e-88 329.3 223 69.1
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 3.5e-88 328.9 223 69.5
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.3e-87 327.0 195 75.4
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 6.6e-87 324.7 245 64.1
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 8.6e-87 324.3 198 74.7
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.5e-86 322.8 198 74.2
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 2.5e-86 322.8 199 73.9
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.3e-86 322.4 198 74.7
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 5.6e-86 321.6 201 73.6
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 2.8e-85 319.3 203 70.4
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 3.6e-85 318.9 224 68.8
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.6e-85 318.9 198 72.7
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 6.2e-85 318.2 201 72.6
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.1e-84 317.4 199 72.4
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.4e-84 317.0 201 73.1
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 1.8e-84 316.6 198 73.2
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.8e-84 316.6 197 71.6
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 3.1e-84 315.8 204 72.5
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 4.0e-84 315.5 198 72.7
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.0e-84 315.5 197 74.1
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 5.2e-84 315.1 199 72.9
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 8.9e-84 314.3 234 62.4
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 1.2e-83 313.9 198 72.2
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 1.2e-83 313.9 198 70.7
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 2.0e-83 313.2 198 70.7
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 2.6e-83 312.8 198 74.2
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 3.4e-83 312.4 203 69.5
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 3.4e-83 312.4 199 72.4
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 5.8e-83 311.6 199 71.9
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 9.9e-83 310.8 222 65.8
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.3e-82 310.5 198 71.7
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.3e-82 310.5 202 71.3
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 1.7e-82 310.1 198 71.7
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.2e-82 309.7 197 69.5
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.1e-81 307.4 197 73.1
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.4e-81 307.0 198 69.7
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.4e-81 307.0 195 69.2
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 2.4e-81 306.2 198 70.2
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 4.1e-81 305.4 198 70.2
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 5.4e-81 305.1 198 71.2
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 5.4e-81 305.1 198 69.2
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 5.4e-81 305.1 198 67.7
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 7.1e-81 304.7 198 67.7
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 1.6e-80 303.5 198 70.2
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 2.1e-80 303.1 199 69.8
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 2.7e-80 302.8 198 70.2
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 3.5e-80 302.4 189 71.4
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 6.0e-80 301.6 198 69.7
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 7.8e-80 301.2 196 69.9
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.0e-79 300.8 183 74.3
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.0e-79 300.8 198 71.2
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 1.3e-79 300.4 204 68.1
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 1.3e-79 300.4 198 68.7
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 2.3e-79 299.7 196 68.9
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 3.0e-79 299.3 198 69.7
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 5.1e-79 298.5 198 67.7
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 5.1e-79 298.5 186 72.0
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 8.6e-79 297.7 204 67.2
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.1e-78 297.4 216 63.0
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 1.1e-78 297.4 198 67.2
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 5.6e-78 295.0 199 72.4
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 9.5e-78 294.3 198 68.7
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.2e-77 293.9 183 71.0
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.2e-77 293.9 198 68.2
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.6e-77 293.5 184 71.2
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.1e-77 293.1 209 64.6
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 2.8e-77 292.7 199 70.9
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 2.8e-77 292.7 198 69.7
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 6.2e-77 291.6 198 66.7
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 6.2e-77 291.6 198 66.7
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 8.1e-77 291.2 197 69.5
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 8.1e-77 291.2 199 68.3
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 8.1e-77 291.2 198 67.7
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.1e-76 290.8 184 70.7
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.1e-76 290.8 184 70.7
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 1.4e-76 290.4 193 67.4
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 1.4e-76 290.4 198 67.7
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.8e-76 290.0 183 71.0
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.4e-76 289.7 199 69.8
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 2.4e-76 289.7 198 67.7
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 3.1e-76 289.3 186 71.0
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.2e-76 288.5 198 68.2
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 6.8e-76 288.1 198 65.7
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 8.9e-76 287.7 198 68.2
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 1.5e-75 287.0 186 71.0
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.4e-75 285.8 198 67.7
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 1.7e-74 283.5 199 67.8
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.7e-74 283.5 191 69.1
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.7e-74 283.5 198 66.2
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.9e-73 280.0 198 66.7
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 1.9e-73 280.0 202 62.4
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 2.4e-73 279.6 198 64.6
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 3.2e-73 279.3 198 66.2
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 7.1e-73 278.1 198 63.1
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 9.2e-73 277.7 191 66.5
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 9.2e-73 277.7 195 65.1
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.2e-72 277.3 185 71.9
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.1e-72 276.6 192 66.7
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 2.1e-72 276.6 199 64.8
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 4.6e-72 275.4 198 64.6
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 4.6e-72 275.4 198 64.6
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 7.8e-72 274.6 187 66.3
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 3.0e-71 272.7 196 64.3
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 3.9e-71 272.3 198 65.2
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 3.9e-71 272.3 198 63.1
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 7.3e-70 268.1 191 67.0
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 2.1e-69 266.5 205 60.0
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 4.4e-67 258.8 183 63.9
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 9.9e-67 257.7 196 60.7
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 4.9e-66 255.4 178 65.7
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.1e-65 254.2 180 65.6
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 6.6e-63 245.0 187 59.4
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 2.5e-62 243.0 212 57.5
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.6e-61 240.4 143 74.8
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.4e-60 236.5 169 64.5
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 9.0e-60 234.6 144 72.2
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.2e-59 234.2 170 64.7
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 9.3e-57 224.6 144 68.8
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.2e-56 224.2 187 54.0
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 3.5e-56 222.6 167 61.1
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 5.1e-55 218.8 156 65.4
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.9e-54 216.9 211 53.1
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 3.3e-54 216.1 144 65.3
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 1.6e-53 213.8 194 51.5
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.1e-49 201.1 198 48.0
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 4.3e-46 189.1 114 69.3
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 3.1e-44 183.0 199 49.2
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 3.4e-43 179.5 98 78.6
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 7.6e-43 178.3 124 66.1
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 1.0e-42 177.9 198 48.5
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 1.8e-39 167.2 188 45.2
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.3e-34 151.0 184 44.6
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 2.7e-32 143.3 178 40.4
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 1.0e-23 114.8 185 35.1
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.0e-23 114.8 118 47.5
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.8e-23 114.0 73 64.4
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.3e-23 113.6 68 73.5
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 6.7e-23 112.1 123 47.2
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 2.8e-21 106.7 121 47.1
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 4.1e-20 102.8 120 43.3
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 6.9e-20 102.1 194 37.1
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.8e-18 96.3 103 46.6
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 2.5e-17 93.6 70 61.4
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.1e-16 90.5 58 74.1
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.1e-08 63.9 43 67.4
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.4e-07 61.2 49 59.2
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 3.3e-06 56.6 85 43.5
Cre03.g145427 Chlamydomonas reinhardtii HOM05D037009 ORTHO05D034383 7.5e-06 55.5 128 28.9


User provided reference genes

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