Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2293 Punica granatum HOM05D004456 ORTHO05D005287 6.8e-66 253.8 126 100.0
PGR142G2513 Punica granatum HOM05D004456 ORTHO05D005287 4.4e-65 251.1 126 99.2
PGR142G0707 Punica granatum HOM05D004456 ORTHO05D005287 2.9e-61 238.4 126 95.2
PGR073G0004 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-58 229.6 126 90.5
PGR073G0005 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-58 229.6 126 90.5
PGR073G0001 Punica granatum HOM05D004456 ORTHO05D005287 6.8e-58 227.3 126 89.7
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 8.9e-58 226.9 126 91.3
PGR142G0749 Punica granatum HOM05D004456 ORTHO05D005287 1.2e-57 226.5 125 89.6
PGR073G0006 Punica granatum HOM05D004456 ORTHO05D005287 1.5e-57 226.1 126 88.9
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 2.0e-57 225.7 126 90.5
PGR087G0002 Punica granatum HOM05D004456 ORTHO05D005287 4.4e-57 224.6 126 88.9
PGR087G0004 Punica granatum HOM05D004456 ORTHO05D005287 4.4e-57 224.6 126 88.9
PGR142G1158 Punica granatum HOM05D004456 ORTHO05D005287 7.5e-57 223.8 126 88.1
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 2.2e-56 222.2 126 89.7
PGR142G0123 Punica granatum HOM05D004456 ORTHO05D005287 1.1e-55 219.9 124 87.9
PGR142G2495 Punica granatum HOM05D004456 ORTHO05D005287 1.0e-53 213.4 126 87.3
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 3.3e-52 208.4 126 83.3
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 7.3e-52 207.2 126 81.0
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 2.1e-51 205.7 121 83.5
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 2.8e-51 205.3 121 83.5
arahy.Tifrunner.gnm1.ann1.PTU9AS Arachis hypogaea HOM05D004456 ORTHO05D005287 8.0e-51 203.8 121 84.3
arahy.Tifrunner.gnm1.ann1.VAHF8H Arachis hypogaea HOM05D004456 ORTHO05D005287 8.0e-51 203.8 121 84.3
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 1.4e-50 203.0 126 80.2
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 5.2e-50 201.1 120 83.3
Atru.chr8.947 Acer truncatum HOM05D004456 ORTHO05D005287 6.8e-50 200.7 126 77.8
ClCG02G018700 Citrullus lanatus HOM05D004456 ORTHO05D005287 6.8e-50 200.7 118 83.9
MELO3C019631.2 Cucumis melo HOM05D004456 ORTHO05D005287 6.8e-50 200.7 118 83.9
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 6.8e-50 200.7 120 82.5
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 6.8e-50 200.7 120 82.5
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 6.8e-50 200.7 120 82.5
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 8.9e-50 200.3 121 82.6
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 1.2e-49 199.9 118 83.1
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 2.6e-49 198.7 121 81.0
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 2.6e-49 198.7 126 79.4
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 2.6e-49 198.7 126 79.4
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 2.6e-49 198.7 126 78.6
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 2.6e-49 198.7 120 81.7
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 3.4e-49 198.4 120 81.7
Lalb_Chr10g0105771 Lupinus albus HOM05D004456 ORTHO05D005287 4.4e-49 198.0 121 81.8
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 4.4e-49 198.0 126 77.8
TAR374G0177 Trochodendron aralioides HOM05D004456 ORTHO05D005287 4.4e-49 198.0 126 78.6
Prupe.1G563700 Prunus persica HOM05D004456 ORTHO05D005287 5.8e-49 197.6 126 78.6
Prupe.4G128400 Prunus persica HOM05D004456 ORTHO05D005287 5.8e-49 197.6 126 78.6
Sed0010742 Sechium edule HOM05D004456 ORTHO05D005287 5.8e-49 197.6 118 83.1
TAR622G1262 Trochodendron aralioides HOM05D004456 ORTHO05D005287 7.5e-49 197.2 125 78.4
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 9.8e-49 196.8 126 77.8
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 9.8e-49 196.8 126 77.8
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 9.8e-49 196.8 126 78.6
LjContig00564g0013918 Lotus japonicus HOM05D004456 ORTHO05D005287 9.8e-49 196.8 121 79.3
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 1.3e-48 196.4 126 78.6
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 1.7e-48 196.1 126 77.0
Aqoxy3G00192 Aquilegia oxysepala HOM05D004456 ORTHO05D005287 2.9e-48 195.3 126 77.8
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 2.9e-48 195.3 126 78.6
Dinv05126 Davidia involucrata HOM05D004456 ORTHO05D005287 2.9e-48 195.3 126 77.0
Gohir.A11G319600 Gossypium hirsutum HOM05D004456 ORTHO05D005287 3.7e-48 194.9 126 77.0
HanXRQChr03g0087831 Helianthus annuus HOM05D004456 ORTHO05D005287 3.7e-48 194.9 126 77.0
ECA246G0212 Erigeron canadensis HOM05D004456 ORTHO05D005287 4.9e-48 194.5 126 77.0
THA.LOC104812342 Tarenaya hassleriana HOM05D004456 ORTHO05D005287 6.4e-48 194.1 121 78.5
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 8.3e-48 193.7 126 79.4
Aa31LG7G1200 Aethionema arabicum HOM05D004456 ORTHO05D005287 1.1e-47 193.4 121 78.5
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 1.4e-47 193.0 118 80.5
Oeu015180.1 Olea europaea HOM05D004456 ORTHO05D005287 1.9e-47 192.6 126 79.4
Solyc02g069840.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 1.9e-47 192.6 123 78.0
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 1.9e-47 192.6 123 78.0
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 2.4e-47 192.2 123 77.2
BcaC07g38811 Brassica carinata HOM05D004456 ORTHO05D005287 3.2e-47 191.8 121 76.9
A08p31300 Brassica napus HOM05D004456 ORTHO05D005287 3.2e-47 191.8 121 76.9
C08p17530 Brassica napus HOM05D004456 ORTHO05D005287 3.2e-47 191.8 121 76.9
BolC8t49379H Brassica oleracea HOM05D004456 ORTHO05D005287 3.2e-47 191.8 121 76.9
DCAR_003856 Daucus carota HOM05D004456 ORTHO05D005287 3.2e-47 191.8 126 76.2
HanXRQChr17g0543051 Helianthus annuus HOM05D004456 ORTHO05D005287 3.2e-47 191.8 123 76.4
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 4.1e-47 191.4 126 76.2
A06p12700 Brassica napus HOM05D004456 ORTHO05D005287 5.4e-47 191.0 121 76.9
C05p15000 Brassica napus HOM05D004456 ORTHO05D005287 5.4e-47 191.0 121 76.9
BolC5t30215H Brassica oleracea HOM05D004456 ORTHO05D005287 5.4e-47 191.0 121 76.9
BraA06t24430Z Brassica rapa HOM05D004456 ORTHO05D005287 5.4e-47 191.0 121 76.9
MD10G1216300 Malus domestica HOM05D004456 ORTHO05D005287 7.0e-47 190.7 126 76.2
Thhalv10009114m.g Eutrema salsugineum HOM05D004456 ORTHO05D005287 1.2e-46 189.9 121 76.9
Lsat_1_v5_gn_4_69821 Lactuca sativa HOM05D004456 ORTHO05D005287 1.2e-46 189.9 126 74.6
Sp1g14890 Schrenkiella parvula HOM05D004456 ORTHO05D005287 1.2e-46 189.9 121 76.9
CSS0000388 Camellia sinensis var. sinensis HOM05D004456 ORTHO05D005287 1.6e-46 189.5 118 81.4
PGR142G3851 Punica granatum HOM05D004456 ORTHO05D005287 1.6e-46 189.5 110 85.5
BcaB03g13034 Brassica carinata HOM05D004456 ORTHO05D005287 2.0e-46 189.1 121 76.9
BraA08t35053Z Brassica rapa HOM05D004456 ORTHO05D005287 2.0e-46 189.1 121 76.0
Nitab4.5_0004615g0060 Nicotiana tabacum HOM05D004456 ORTHO05D005287 2.7e-46 188.7 123 76.4
BcaB02g06679 Brassica carinata HOM05D004456 ORTHO05D005287 3.5e-46 188.3 119 77.3
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 3.5e-46 188.3 110 85.5
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 3.5e-46 188.3 110 85.5
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 3.5e-46 188.3 123 76.4
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 3.5e-46 188.3 126 77.8
Psat2g023600 Pisum sativum HOM05D004456 ORTHO05D005287 4.6e-46 188.0 120 79.2
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 4.6e-46 188.0 123 76.4
Actinidia13485 Actinidia chinensis HOM05D004456 ORTHO05D005287 6.0e-46 187.6 118 78.0
Lsat_1_v5_gn_1_42081 Lactuca sativa HOM05D004456 ORTHO05D005287 6.0e-46 187.6 123 74.8
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 6.0e-46 187.6 118 79.7
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 6.0e-46 187.6 128 75.0
CARHR017200 Cardamine hirsuta HOM05D004456 ORTHO05D005287 7.8e-46 187.2 121 76.0
MBI03_g42617_MAGBIO Magnolia biondii HOM05D004456 ORTHO05D005287 7.8e-46 187.2 126 77.0
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 7.8e-46 187.2 121 78.5
AT1G16740 Arabidopsis thaliana HOM05D004456 ORTHO05D005287 1.0e-45 186.8 121 76.0
Carub.0001s1648 Capsella rubella HOM05D004456 ORTHO05D005287 1.0e-45 186.8 121 76.0
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 1.0e-45 186.8 112 83.0
AL1G28910 Arabidopsis lyrata HOM05D004456 ORTHO05D005287 2.3e-45 185.7 121 75.2
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 2.3e-45 185.7 124 75.8
MSTRG.14797 Avicennia marina HOM05D004456 ORTHO05D005287 3.0e-45 185.3 118 78.8
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 3.0e-45 185.3 123 77.2
Rhsim05G0148000 Rhododendron simsii HOM05D004456 ORTHO05D005287 3.0e-45 185.3 123 76.4
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 3.9e-45 184.9 123 77.2
ATR0618G343 Amborella trichopoda HOM05D004456 ORTHO05D005287 3.9e-45 184.9 121 78.5
PSO384G3508 Papaver somniferum HOM05D004456 ORTHO05D005287 3.9e-45 184.9 118 77.1
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 3.9e-45 184.9 123 77.2
vmacro03444 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 5.0e-45 184.5 120 75.8
PSO339G5129 Papaver somniferum HOM05D004456 ORTHO05D005287 6.6e-45 184.1 118 77.1
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 8.6e-45 183.7 126 75.4
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 8.6e-45 183.7 126 75.4
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 8.6e-45 183.7 112 81.2
FAN25G2185 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.5e-44 183.0 123 74.0
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 1.5e-44 183.0 118 78.8
RcHm_v2.0_Chr5g0023421 Rosa chinensis HOM05D004456 ORTHO05D005287 1.5e-44 183.0 126 73.8
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 2.5e-44 182.2 123 73.2
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 2.5e-44 182.2 123 73.2
FAN16G3308 Fragaria x ananassa HOM05D004456 ORTHO05D005287 2.5e-44 182.2 123 73.2
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 2.5e-44 182.2 123 76.4
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 2.5e-44 182.2 123 74.0
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 7.3e-44 180.6 118 76.3
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 9.5e-44 180.3 118 75.4
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 1.2e-43 179.9 110 81.8
FAN21G1444 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.6e-43 179.5 123 72.4
EL10Ac4g09241 Beta vulgaris HOM05D004456 ORTHO05D005287 1.1e-42 176.8 121 75.2
AUR62005032 Chenopodium quinoa HOM05D004456 ORTHO05D005287 1.1e-42 176.8 121 76.0
AUR62000936 Chenopodium quinoa HOM05D004456 ORTHO05D005287 1.2e-41 173.3 121 75.2
Nn7g36646 Nelumbo nucifera HOM05D004456 ORTHO05D005287 3.7e-40 168.3 123 71.5
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 6.6e-37 157.5 106 73.6
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 8.6e-37 157.1 106 71.7
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 7.6e-33 144.1 115 61.7
EL10Ac9g22335 Beta vulgaris HOM05D004456 ORTHO05D005287 9.9e-33 143.7 121 64.5
AagrBONN_evm.TU.Sc2ySwM_228.5758 Anthoceros agrestis HOM05D004456 ORTHO05D005287 2.9e-32 142.1 104 67.3
Nitab4.5_0008405g0010 Nicotiana tabacum HOM05D004456 ORTHO05D005287 8.4e-32 140.6 85 82.4
Peaxi162Scf00267g00035 Petunia axillaris HOM05D004456 ORTHO05D005287 7.1e-31 137.5 141 56.7
MCO12G023 Micromonas commoda HOM05D004456 ORTHO05D005287 2.8e-27 125.6 100 62.0
AagrBONN_evm.TU.Sc2ySwM_368.929 Anthoceros agrestis HOM05D004456 ORTHO05D005287 3.6e-27 125.2 93 67.7
PRCOL_00003603 Prasinoderma coloniale HOM05D004456 ORTHO05D005287 1.2e-25 120.2 100 60.0
Cpa.g.sc4.119 Carica papaya HOM05D004456 ORTHO05D005287 1.0e-21 107.1 65 80.0
MD07G1169200 Malus domestica HOM05D004456 ORTHO05D005287 1.0e-21 107.1 106 56.6
Cre01.g052350 Chlamydomonas reinhardtii HOM05D004456 ORTHO05D005287 1.3e-21 106.7 104 53.8
Nn1g08913 Nelumbo nucifera HOM05D004456 ORTHO05D005287 1.7e-21 106.3 61 83.6
Zm00001eb154030 Zea mays HOM05D004456 ORTHO05D005287 2.3e-21 105.9 67 76.1
SHI24418 Sapria himalayana HOM05D004456 ORTHO05D005287 3.3e-20 102.1 64 78.1
CBR_g49054 Chara braunii HOM05D004456 ORTHO05D005287 1.3e-19 100.1 63 73.0
QL06p000079 Quercus lobata HOM05D004456 ORTHO05D005287 3.6e-19 98.6 63 74.6
QL06p000082 Quercus lobata HOM05D004456 ORTHO05D005287 3.6e-19 98.6 61 80.3
SMO244G0037 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 2.6e-17 92.4 95 49.5
SMO281G0018 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 2.6e-17 92.4 95 49.5
Potri.004G095475 Populus trichocarpa HOM05D004456 ORTHO05D005287 3.4e-17 92.0 59 76.3
SMO198G0083 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 3.4e-17 92.0 116 44.0
EL10Ac8g19692 Beta vulgaris HOM05D004456 ORTHO05D005287 1.0e-13 80.5 62 67.7
SHI24419 Sapria himalayana HOM05D004456 ORTHO05D005287 1.1e-12 77.0 53 71.7
EL10Ac8g19693 Beta vulgaris HOM05D004456 ORTHO05D005287 2.9e-08 62.4 39 74.4
Solyc09g055460.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 1.1e-07 60.5 50 60.0


User provided reference genes

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