Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 2.7e-86 322.0 170 100.0
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 4.7e-46 188.3 143 64.3
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.0e-45 187.2 143 63.6
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 5.8e-44 181.4 140 63.6
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 9.8e-44 180.6 146 60.3
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.7e-43 179.9 142 60.6
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 8.3e-43 177.6 143 60.1
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 8.3e-43 177.6 143 60.1
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 4.1e-42 175.3 139 61.2
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.4e-42 174.9 143 58.7
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 5.4e-42 174.9 140 60.0
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 6.0e-41 171.4 153 53.6
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 3.9e-40 168.7 159 56.6
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 6.6e-40 167.9 148 55.4
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.1e-39 167.2 141 61.0
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 3.3e-39 165.6 143 58.7
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 3.3e-39 165.6 143 58.7
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 5.6e-39 164.9 161 52.2
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.2e-38 163.7 141 60.3
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.6e-38 163.3 153 52.9
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.8e-38 162.5 152 55.9
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.8e-38 162.5 150 54.7
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.6e-38 162.2 158 55.1
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 4.7e-38 161.8 137 56.9
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 6.2e-38 161.4 123 64.2
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.4e-37 160.2 154 50.6
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.8e-37 159.8 142 59.9
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.8e-37 159.8 140 55.0
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 2.3e-37 159.5 128 60.2
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.3e-37 159.5 121 60.3
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 2.3e-37 159.5 147 53.7
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 5.2e-37 158.3 146 56.8
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 2.0e-36 156.4 125 61.6
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 2.0e-36 156.4 122 59.8
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 7.5e-36 154.5 161 52.8
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 7.5e-36 154.5 124 61.3
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.7e-35 153.3 160 51.2
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.7e-35 153.3 142 56.3
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.7e-35 153.3 158 55.1
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 2.2e-35 152.9 125 60.0
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 2.2e-35 152.9 156 52.6
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 4.9e-35 151.8 160 50.6
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 6.4e-35 151.4 151 54.3
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 2.4e-34 149.4 164 48.8
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 3.2e-34 149.1 153 52.9
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 5.4e-34 148.3 152 48.0
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.7e-33 146.0 159 52.8
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 6.0e-33 144.8 145 49.0
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 6.0e-33 144.8 155 53.5
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 3.0e-32 142.5 143 55.2
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 5.1e-32 141.7 107 63.6
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.5e-31 139.4 144 51.4
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 4.3e-31 138.7 148 52.0
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 5.6e-31 138.3 127 57.5
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 7.3e-31 137.9 153 46.4
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 1.6e-30 136.7 134 49.3
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 2.1e-30 136.3 95 62.1
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.8e-30 136.0 159 50.3
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 3.1e-29 132.5 161 48.4
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 6.8e-29 131.3 128 51.6
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 6.8e-29 131.3 139 49.6
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 8.9e-29 131.0 134 50.0
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.0e-28 129.8 155 45.2
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.6e-28 129.4 154 44.8
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 4.4e-28 128.6 171 45.6
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 7.6e-28 127.9 138 47.1
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 9.9e-28 127.5 134 48.5
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.3e-27 127.1 116 55.2
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.7e-27 126.7 136 50.0
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.7e-27 126.7 138 48.6
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 2.2e-27 126.3 138 46.4
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 2.9e-27 125.9 147 49.7
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 8.4e-27 124.4 111 55.0
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 8.4e-27 124.4 138 47.1
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.1e-26 124.0 135 49.6
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 4.1e-26 122.1 138 46.4
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 5.4e-26 121.7 128 49.2
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 1.2e-25 120.6 150 47.3
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 1.6e-25 120.2 123 50.4
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 2.7e-25 119.4 152 47.4
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 2.7e-25 119.4 148 43.2
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 2.7e-25 119.4 132 48.5
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.7e-24 116.7 108 49.1
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 2.3e-24 116.3 149 43.6
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.3e-24 116.3 148 45.3
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.5e-23 113.6 136 45.6
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.9e-23 113.2 155 49.0
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.9e-23 113.2 141 45.4
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.5e-23 112.8 148 41.9
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 2.5e-23 112.8 84 60.7
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 5.6e-23 111.7 148 39.9
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 5.6e-23 111.7 148 39.9
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 5.6e-23 111.7 128 46.1
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 1.2e-22 110.5 121 45.5
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 4.7e-22 108.6 147 38.8
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 4.7e-22 108.6 141 43.3
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 4.7e-22 108.6 158 41.8
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 8.1e-22 107.8 143 42.7
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.1e-21 107.5 143 42.0
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.1e-21 107.5 143 42.0
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.1e-21 107.5 116 50.9
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 1.4e-21 107.1 131 47.3
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 2.4e-21 106.3 113 48.7
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 8.9e-21 104.4 145 41.4
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 8.9e-21 104.4 145 41.4
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 1.2e-20 104.0 136 44.9
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.5e-20 103.6 98 53.1
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 3.4e-20 102.4 83 51.8
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 4.4e-20 102.1 137 42.3
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 4.4e-20 102.1 116 45.7
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 7.6e-20 101.3 125 44.0
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 9.9e-20 100.9 138 42.0
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 1.3e-19 100.5 96 51.0
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.7e-19 100.1 128 43.8
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 7.1e-18 94.7 117 46.2
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 7.1e-18 94.7 127 44.1
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 2.7e-17 92.8 139 41.7
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 4.6e-17 92.0 129 41.9
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 3.9e-16 89.0 147 37.4
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 3.9e-16 89.0 150 40.7
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 8.7e-16 87.8 147 35.4
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.1e-15 87.4 100 43.0
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.3e-15 85.9 64 59.4
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.3e-14 84.0 149 40.3
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 1.3e-14 84.0 150 42.0
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.3e-14 84.0 154 38.3
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 1.6e-14 83.6 150 41.3
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 2.8e-14 82.8 152 39.5
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 4.8e-14 82.0 150 40.7
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 4.8e-14 82.0 150 40.7
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 4.8e-14 82.0 150 40.7
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.4e-13 80.5 149 39.6
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 1.4e-13 80.5 109 45.9
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 3.4e-12 75.9 132 41.7
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.7e-11 73.6 149 38.3
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 8.4e-11 71.2 147 36.7
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 1.2e-09 67.4 61 55.7
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 2.7e-09 66.2 53 50.9
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 4.6e-09 65.5 61 54.1
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.3e-06 57.4 80 35.0
Zm00001eb199930 Zea mays HOM05D005114 ORTHO05D006301 1.3e-06 57.4 132 32.6
SEGI_36834 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 8.1e-06 54.7 79 36.7


User provided reference genes

Program Settings