Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 4.4e-287 990.7 548 100.0
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 1.0e-65 255.4 526 39.5
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 1.7e-65 254.6 525 40.0
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 3.6e-63 246.9 526 39.2
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 8.0e-63 245.7 522 39.3
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 4.0e-62 243.4 525 39.0
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 2.6e-61 240.7 519 37.4
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 5.7e-61 239.6 524 38.4
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 7.5e-61 239.2 531 37.9
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 9.8e-61 238.8 550 38.0
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.3e-60 238.4 531 37.7
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 1.7e-60 238.0 512 37.9
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 2.2e-60 237.7 526 38.8
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 2.9e-60 237.3 525 38.3
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 8.3e-60 235.7 528 38.4
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 1.6e-58 231.5 521 40.7
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 1.6e-58 231.5 524 38.0
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 3.5e-58 230.3 523 37.9
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 2.5e-56 224.2 518 38.0
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 7.3e-56 222.6 559 36.0
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 2.8e-55 220.7 517 36.9
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 1.2e-53 215.3 516 36.6
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 5.8e-53 213.0 533 36.8
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 9.8e-53 212.2 517 36.2
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.3e-52 211.8 535 36.3
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 2.9e-52 210.7 526 37.6
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 8.3e-52 209.1 403 40.2
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 1.6e-50 204.9 432 37.0
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 6.6e-49 199.5 368 40.5
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 5.6e-48 196.4 410 37.6
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 3.6e-47 193.7 405 38.3
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 1.8e-46 191.4 504 34.1
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 2.3e-46 191.0 405 37.5
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 2.6e-45 187.6 391 39.4
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 1.9e-43 181.4 309 40.8
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 9.2e-43 179.1 519 33.7
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 2.7e-42 177.6 530 35.7
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 2.5e-40 171.0 399 36.6
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 5.6e-40 169.9 548 31.6
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 5.6e-40 169.9 528 34.1
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 2.1e-39 167.9 414 34.3
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 3.6e-39 167.2 527 34.9
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 3.1e-38 164.1 522 34.3
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 8.9e-38 162.5 516 33.1
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 2.0e-37 161.4 542 33.2
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 5.8e-37 159.8 506 33.4
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 7.6e-37 159.5 505 33.3
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 9.9e-37 159.1 509 32.4
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 1.7e-36 158.3 518 31.9
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 4.9e-36 156.8 521 34.5
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 6.4e-36 156.4 398 35.9
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 1.4e-35 155.2 505 32.7
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 1.9e-35 154.8 510 33.5
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 3.2e-35 154.1 520 34.0
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 4.1e-35 153.7 520 34.4
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 2.7e-34 151.0 506 34.4
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 3.5e-34 150.6 293 42.7
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 3.0e-33 147.5 527 32.3
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 5.1e-33 146.7 364 36.8
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 8.6e-33 146.0 528 30.5
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 1.5e-32 145.2 519 33.5
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 4.3e-32 143.7 363 34.4
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 5.6e-32 143.3 363 35.0
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 1.2e-31 142.1 517 32.3
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 3.4e-29 134.0 359 34.0
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 2.9e-28 131.0 531 29.4
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 2.4e-27 127.9 358 34.6
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 7.1e-27 126.3 394 32.0
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 9.3e-27 125.9 424 30.7
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 1.6e-26 125.2 433 33.0
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 2.7e-26 124.4 521 29.0
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 4.6e-26 123.6 394 31.0
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 7.8e-26 122.9 518 29.5
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 1.0e-25 122.5 457 28.9
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 5.1e-25 120.2 232 40.5
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 1.3e-23 115.5 364 34.3
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 2.8e-23 114.4 400 32.5
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 4.8e-23 113.6 370 33.5
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 8.1e-23 112.8 409 31.3
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 6.9e-22 109.8 417 30.9
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 2.0e-21 108.2 343 33.5
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 2.6e-21 107.8 365 31.2
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 2.6e-21 107.8 365 31.2
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 1.7e-20 105.1 383 32.4
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 1.7e-20 105.1 244 37.7
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 1.7e-20 105.1 452 30.1
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 2.2e-20 104.8 410 29.8
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 2.9e-20 104.4 125 56.0
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 3.8e-20 104.0 398 28.1
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 1.1e-19 102.4 534 28.7
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 3.2e-19 100.9 378 29.4
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 3.2e-19 100.9 394 32.0
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 5.4e-19 100.1 130 51.5
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 2.1e-18 98.2 428 27.8
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 2.3e-17 94.7 233 36.1
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 2.3e-17 94.7 388 28.6
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 7.4e-16 89.7 423 28.6
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 9.6e-16 89.4 180 39.4
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 2.4e-14 84.7 194 43.3
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 3.1e-14 84.3 143 41.3
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 5.3e-14 83.6 234 34.2
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 9.0e-14 82.8 175 37.7
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 3.4e-13 80.9 193 37.8
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 2.2e-12 78.2 340 29.4
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 2.2e-12 78.2 83 57.8
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 2.9e-12 77.8 227 32.6
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 6.4e-12 76.6 186 38.7
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 2.4e-11 74.7 146 39.0
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 2.4e-11 74.7 172 39.0
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 2.7e-10 71.2 140 42.9
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 4.6e-10 70.5 72 59.7
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 6.0e-10 70.1 268 30.6
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 7.9e-10 69.7 140 39.3
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 3.0e-09 67.8 190 34.2
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 3.9e-09 67.4 146 37.7
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 6.7e-09 66.6 341 27.3
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 7.4e-08 63.2 194 34.5
ATR0820G116 Amborella trichopoda HOM05D005512 ORTHO05D006716 8.1e-07 59.7 189 33.9
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 9.0e-06 56.2 219 31.1


User provided reference genes

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