Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2110 Punica granatum HOM05D003436 ORTHO05D003674 6.4e-49 197.2 107 100.0
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 9.6e-13 77.0 94 48.9
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 2.1e-12 75.9 104 45.2
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 2.8e-12 75.5 121 43.0
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 8.2e-12 73.9 106 44.3
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 2.4e-11 72.4 118 43.2
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 2.4e-11 72.4 94 44.7
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 3.1e-11 72.0 92 47.8
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 4.0e-11 71.6 107 41.1
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 5.3e-11 71.2 106 42.5
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.2e-10 70.1 112 42.0
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 1.2e-10 70.1 106 44.3
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 1.5e-10 69.7 91 46.2
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 2.6e-10 68.9 78 50.0
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 4.5e-10 68.2 102 43.1
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 4.5e-10 68.2 104 40.4
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 4.5e-10 68.2 100 45.0
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 5.8e-10 67.8 78 50.0
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 1.0e-09 67.0 99 39.4
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 1.0e-09 67.0 96 42.7
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 1.3e-09 66.6 106 41.5
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 1.7e-09 66.2 78 47.4
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 1.7e-09 66.2 80 46.2
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 2.2e-09 65.9 106 42.5
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 2.2e-09 65.9 106 44.3
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 2.9e-09 65.5 67 53.7
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 2.9e-09 65.5 106 41.5
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 2.9e-09 65.5 99 42.4
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 2.9e-09 65.5 106 43.4
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 2.9e-09 65.5 99 38.4
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 3.8e-09 65.1 105 41.0
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 4.9e-09 64.7 112 41.1
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 4.9e-09 64.7 95 42.1
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 4.9e-09 64.7 110 40.0
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 6.5e-09 64.3 106 41.5
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 6.5e-09 64.3 105 41.0
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 8.4e-09 63.9 90 44.4
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 8.4e-09 63.9 100 43.0
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 8.4e-09 63.9 96 41.7
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 1.1e-08 63.5 103 40.8
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 1.1e-08 63.5 92 38.0
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 1.4e-08 63.2 105 43.8
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 1.9e-08 62.8 122 36.9
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 1.9e-08 62.8 78 46.2
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 1.9e-08 62.8 93 45.2
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 2.5e-08 62.4 102 39.2
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 2.5e-08 62.4 100 44.0
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 3.2e-08 62.0 77 45.5
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 3.2e-08 62.0 99 42.4
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 4.2e-08 61.6 106 40.6
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 4.2e-08 61.6 104 42.3
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 4.2e-08 61.6 108 39.8
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 4.2e-08 61.6 98 39.8
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 4.2e-08 61.6 120 39.2
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 5.5e-08 61.2 68 47.1
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 7.1e-08 60.8 102 38.2
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.1e-08 60.8 120 37.5
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 7.1e-08 60.8 78 43.6
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 9.3e-08 60.5 97 40.2
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 9.3e-08 60.5 95 37.9
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.2e-07 60.1 84 42.9
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.2e-07 60.1 84 42.9
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 1.2e-07 60.1 84 42.9
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 1.6e-07 59.7 95 40.0
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 2.7e-07 58.9 101 37.6
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 2.7e-07 58.9 78 43.6
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 2.7e-07 58.9 81 38.3
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 2.7e-07 58.9 94 41.5
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 2.7e-07 58.9 68 45.6
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 3.5e-07 58.5 101 36.6
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.0e-07 57.8 96 35.4
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.0e-07 57.8 97 37.1
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 6.0e-07 57.8 104 32.7
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 6.0e-07 57.8 103 35.0
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 6.0e-07 57.8 96 39.6
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 7.9e-07 57.4 69 44.9
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 7.9e-07 57.4 96 38.5
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 7.9e-07 57.4 78 43.6
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 1.0e-06 57.0 97 35.1
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 1.0e-06 57.0 96 37.5
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 1.3e-06 56.6 91 37.4
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 1.8e-06 56.2 78 43.6
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.8e-06 56.2 104 37.5
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 1.8e-06 56.2 95 35.8
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 2.3e-06 55.8 72 43.1
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 3.0e-06 55.5 96 38.5
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 3.0e-06 55.5 78 42.3
vmacro07912 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 3.0e-06 55.5 120 37.5
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 3.9e-06 55.1 94 38.3
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 3.9e-06 55.1 106 37.7
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.9e-06 55.1 95 36.8
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 3.9e-06 55.1 97 40.2
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 5.1e-06 54.7 78 42.3
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 5.1e-06 54.7 91 36.3
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.7e-06 54.3 89 42.7
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 8.7e-06 53.9 97 38.1
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 8.7e-06 53.9 97 37.1


User provided reference genes

Program Settings