Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 2.9e-171 605.1 304 100.0
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 7.2e-106 387.9 334 65.3
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 4.7e-105 385.2 352 63.4
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 6.1e-105 384.8 346 63.9
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.0e-104 384.0 346 65.3
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 8.9e-104 380.9 341 64.5
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.9e-104 380.9 334 64.4
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.2e-103 380.6 335 64.2
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 3.4e-103 379.0 346 63.3
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 3.7e-102 375.6 348 62.1
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 3.2e-101 372.5 348 61.8
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.2e-101 372.5 347 61.7
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 7.0e-101 371.3 346 62.1
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.2e-101 370.9 343 62.1
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.5e-100 369.0 346 62.1
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 4.5e-100 368.6 345 63.2
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.7e-99 366.7 348 61.2
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.7e-99 366.7 332 63.3
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 2.9e-99 365.9 345 61.7
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 3.9e-99 365.5 345 62.9
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.9e-99 365.5 345 62.9
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.9e-99 365.5 332 63.3
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 8.6e-99 364.4 346 61.6
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.1e-98 364.0 337 62.9
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.5e-98 362.8 337 62.0
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 4.3e-98 362.1 346 61.6
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 9.5e-98 360.9 342 61.4
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 9.5e-98 360.9 344 62.2
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 9.5e-98 360.9 345 61.4
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 2.1e-97 359.8 342 60.5
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.8e-97 359.4 332 63.3
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 3.1e-96 355.9 343 63.0
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 3.1e-96 355.9 343 61.2
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.2e-96 355.1 335 61.2
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 5.8e-95 351.7 350 58.9
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 7.5e-95 351.3 342 61.7
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.3e-94 350.5 336 60.7
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.7e-94 350.1 345 60.3
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 6.4e-94 348.2 347 60.5
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 8.3e-94 347.8 336 60.4
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.4e-93 347.1 345 60.6
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.4e-93 347.1 347 60.2
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.9e-93 346.7 345 60.6
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 3.9e-91 339.0 345 59.7
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 3.9e-91 339.0 345 60.0
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.5e-90 337.0 349 59.9
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 2.5e-90 336.3 347 59.7
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 4.3e-90 335.5 349 58.7
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 9.5e-90 334.3 340 58.5
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.2e-89 334.0 347 59.4
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 1.6e-89 333.6 347 59.4
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 2.1e-89 333.2 345 57.1
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 2.8e-89 332.8 347 59.4
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 2.8e-89 332.8 347 57.3
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 3.6e-89 332.4 412 51.2
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 8.0e-89 331.3 415 50.6
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 1.4e-88 330.5 342 60.8
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.3e-88 329.7 349 58.5
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 2.3e-88 329.7 347 57.1
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 4.0e-88 328.9 346 58.1
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 8.9e-88 327.8 336 58.6
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 3.4e-87 325.9 337 59.1
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 4.4e-87 325.5 342 57.9
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 1.3e-86 323.9 343 58.3
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 1.7e-86 323.6 329 59.0
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 1.7e-86 323.6 349 56.2
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.2e-86 323.2 345 55.1
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.2e-86 323.2 334 58.7
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 2.9e-86 322.8 345 57.4
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 2.9e-86 322.8 334 59.9
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 3.7e-86 322.4 339 57.2
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 3.7e-86 322.4 343 55.4
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 4.9e-86 322.0 340 57.4
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 4.9e-86 322.0 330 56.4
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 6.4e-86 321.6 344 55.8
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.4e-86 321.6 344 57.0
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 8.3e-86 321.2 387 51.7
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.1e-85 320.9 346 54.9
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.4e-85 320.5 344 55.5
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 4.1e-85 318.9 348 54.9
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 5.4e-85 318.5 345 57.4
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 7.1e-85 318.2 337 55.5
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 3.5e-84 315.8 350 57.7
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 4.6e-84 315.5 344 55.8
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.3e-83 313.2 329 57.4
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 2.3e-83 313.2 344 56.1
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.9e-82 310.1 334 54.8
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.9e-82 310.1 339 57.2
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.3e-82 309.3 392 52.3
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.3e-82 309.3 350 53.4
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.2e-81 307.4 318 58.8
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.2e-81 307.4 339 56.3
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 2.1e-81 306.6 333 54.1
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.1e-81 306.6 334 55.4
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.1e-80 304.3 339 53.4
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.4e-80 303.9 359 52.6
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.4e-80 303.9 341 54.5
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 1.4e-80 303.9 337 54.3
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.8e-80 303.5 338 54.1
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.3e-80 303.1 349 55.3
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.3e-80 303.1 341 54.3
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 3.1e-80 302.8 328 56.1
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 3.1e-80 302.8 343 56.9
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 4.0e-80 302.4 331 54.7
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 4.0e-80 302.4 328 56.1
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 5.2e-80 302.0 343 54.8
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 8.9e-80 301.2 337 54.6
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-79 300.8 329 54.4
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.2e-79 300.8 342 54.4
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.5e-79 300.4 327 56.3
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.5e-79 300.4 327 56.3
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.6e-79 299.7 336 54.2
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 2.2e-78 296.6 350 55.7
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.9e-78 296.2 341 52.2
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.4e-77 293.9 345 52.8
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.4e-77 293.1 337 52.5
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 3.2e-77 292.7 270 60.4
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 5.4e-77 292.0 344 53.5
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 9.2e-77 291.2 327 55.0
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.3e-75 287.3 339 51.6
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.7e-75 287.0 296 60.1
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 2.3e-75 286.6 333 53.5
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 3.9e-75 285.8 317 58.0
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 1.1e-74 284.3 342 51.5
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-73 280.8 337 52.2
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 2.8e-73 279.6 330 53.3
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 2.8e-73 279.6 330 53.3
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 3.6e-73 279.3 336 51.5
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 4.7e-73 278.9 334 51.5
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 6.2e-73 278.5 350 52.6
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 8.1e-73 278.1 334 52.1
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.4e-72 276.6 332 50.9
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.5e-71 273.9 277 59.2
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 7.6e-71 271.6 335 52.5
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 9.9e-71 271.2 327 53.5
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 4.9e-70 268.9 342 48.0
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.4e-69 267.3 348 49.1
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 7.1e-69 265.0 325 49.5
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 9.3e-69 264.6 259 59.8
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.4e-64 250.8 246 61.4
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.4e-64 250.8 307 52.4
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.2e-62 243.4 250 56.8
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 7.9e-60 235.0 188 67.6
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 7.3e-58 228.4 333 44.7
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 5.8e-55 218.8 243 53.1
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 9.3e-37 158.3 315 39.7
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 6.9e-32 142.1 391 32.2
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.4e-29 134.4 236 42.8
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 4.2e-29 132.9 324 36.7
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.4e-27 127.9 140 52.9
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.8e-19 100.9 156 44.9
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 2.8e-17 93.6 207 34.3
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.1e-12 77.4 156 35.9
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 3.6e-12 76.6 174 37.4
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 4.4e-10 69.7 221 28.5
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 4.8e-09 66.2 242 26.4
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 6.3e-09 65.9 250 26.8
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 6.3e-09 65.9 113 44.2
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 8.2e-09 65.5 141 34.8
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 2.4e-08 63.9 323 26.3
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 2.7e-07 60.5 154 29.2


User provided reference genes

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