Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 2.7e-109 398.7 198 100.0
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 1.2e-80 303.5 198 76.3
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 1.4e-78 296.6 198 74.7
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.2e-77 293.5 198 72.7
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 2.7e-77 292.4 201 73.1
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 4.6e-77 291.6 200 73.5
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 7.9e-77 290.8 206 70.9
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 2.3e-76 289.3 193 74.6
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 6.6e-76 287.7 203 70.9
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 2.5e-75 285.8 193 72.5
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 3.3e-75 285.4 193 72.5
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 3.3e-75 285.4 186 74.2
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 4.3e-75 285.0 207 70.5
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 9.6e-75 283.9 195 70.3
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 9.6e-75 283.9 200 71.5
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.8e-74 282.3 212 69.3
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 4.8e-74 281.6 209 68.9
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 3.1e-73 278.9 209 68.4
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.5e-72 276.6 199 70.9
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 2.0e-72 276.2 197 69.5
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 2.0e-72 276.2 201 69.7
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.6e-72 274.2 197 69.0
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 9.9e-72 273.9 208 67.3
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 1.3e-71 273.5 197 70.6
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 2.2e-71 272.7 197 67.0
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 3.8e-71 271.9 208 67.3
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.8e-71 271.9 197 69.0
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 6.4e-71 271.2 247 59.9
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 8.4e-71 270.8 206 66.0
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.1e-70 270.4 188 71.8
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.4e-70 270.0 197 69.5
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 5.5e-70 268.1 197 68.5
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.2e-69 266.9 201 66.2
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 2.1e-69 266.2 209 67.0
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 2.1e-69 266.2 198 66.2
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 2.1e-69 266.2 197 64.5
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 6.0e-69 264.6 186 66.7
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 7.9e-69 264.2 195 65.6
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 1.3e-68 263.5 194 65.5
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 2.3e-68 262.7 198 64.6
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 2.3e-68 262.7 201 65.2
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 3.0e-68 262.3 192 69.3
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 3.0e-68 262.3 207 63.8
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 3.0e-68 262.3 198 65.2
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 8.7e-68 260.8 190 66.8
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 1.5e-67 260.0 200 64.5
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 9.6e-67 257.3 195 64.6
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 1.3e-66 256.9 198 63.6
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.3e-66 256.9 247 56.7
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 2.1e-66 256.1 198 63.1
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 2.8e-66 255.8 198 64.1
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 3.7e-66 255.4 198 64.1
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 3.7e-66 255.4 193 64.2
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 3.7e-66 255.4 193 64.2
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 4.8e-66 255.0 188 65.4
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 4.8e-66 255.0 190 65.3
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 4.8e-66 255.0 198 63.1
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 6.2e-66 254.6 284 51.1
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 8.1e-66 254.2 206 63.6
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 1.1e-65 253.8 196 63.8
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.1e-65 253.8 189 67.2
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 1.1e-65 253.8 187 65.2
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 1.8e-65 253.1 193 62.2
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 1.8e-65 253.1 189 63.5
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 1.8e-65 253.1 188 63.8
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 2.4e-65 252.7 195 63.6
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 3.1e-65 252.3 196 66.8
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 4.0e-65 251.9 196 66.8
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 4.0e-65 251.9 197 62.9
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 5.3e-65 251.5 198 62.6
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 9.0e-65 250.8 193 63.7
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 9.0e-65 250.8 193 63.2
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 9.0e-65 250.8 193 63.2
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 1.2e-64 250.4 193 65.3
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 2.6e-64 249.2 210 61.0
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.0e-63 247.3 198 61.1
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 1.0e-63 247.3 193 63.2
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.3e-63 246.9 197 61.9
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 1.7e-63 246.5 186 64.0
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 2.9e-63 245.7 194 62.4
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 8.4e-63 244.2 192 59.9
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 1.4e-62 243.4 198 62.1
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 7.1e-62 241.1 210 59.5
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 3.5e-61 238.8 157 73.9
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.0e-60 237.3 200 59.5
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.3e-60 236.9 198 63.1
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 8.7e-60 234.2 227 55.9
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 8.7e-60 234.2 194 61.3
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.9e-59 233.0 200 59.0
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 8.2e-58 227.6 186 64.0
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.8e-57 226.5 305 45.6
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.4e-56 222.2 152 69.1
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 7.6e-56 221.1 146 76.7
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 1.9e-54 216.5 192 58.3
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 4.2e-54 215.3 142 71.8
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 4.6e-53 211.8 348 40.5
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 8.7e-52 207.6 187 57.2
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 1.9e-51 206.5 207 54.6
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 7.4e-51 204.5 152 65.8
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.3e-50 203.8 183 55.2
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.8e-49 199.9 167 61.1
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 1.4e-46 190.3 174 55.2
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 3.9e-44 182.2 123 76.4
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 3.7e-42 175.6 125 70.4
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 1.1e-41 174.1 194 48.5
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.6e-40 169.5 202 48.0
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 1.7e-39 166.8 146 57.5
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 1.4e-38 163.7 197 45.7
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 3.9e-36 155.6 188 45.2
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 8.8e-36 154.5 192 45.8
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 6.3e-34 148.3 109 63.3
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 4.1e-33 145.6 111 64.0
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 5.5e-30 135.2 270 36.3
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 2.7e-29 132.9 106 62.3
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 8.0e-29 131.3 192 42.7
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.0e-28 131.0 117 60.7
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.6e-27 126.3 136 53.7
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 2.8e-26 122.9 94 56.4
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 4.2e-22 109.0 75 70.7
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 5.2e-20 102.1 87 62.1
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 8.3e-18 94.7 84 54.8
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.9e-16 88.6 89 47.2
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.0e-15 87.8 190 33.2
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.3e-15 87.4 89 48.3
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 1.7e-15 87.0 90 46.7
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.7e-15 87.0 147 32.7
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.9e-15 86.3 89 47.2
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 1.9e-14 83.6 196 36.2
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 4.2e-14 82.4 56 75.0
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 1.6e-13 80.5 54 74.1
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 5.7e-11 72.0 107 41.1
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 9.8e-11 71.2 54 57.4
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.8e-10 69.7 86 46.5
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 1.8e-09 67.0 54 57.4
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 1.8e-09 67.0 54 57.4
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 1.8e-09 67.0 54 57.4
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.1e-09 66.2 52 53.8
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.5e-08 62.4 49 57.1


User provided reference genes

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