Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 2.3e-237 825.1 400 100.0
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 3.2e-178 628.6 404 76.7
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 2.1e-177 625.9 400 74.0
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 2.7e-177 625.5 404 76.0
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 2.2e-174 615.9 403 76.2
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 3.7e-174 615.1 403 75.2
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.0e-171 607.1 404 73.3
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 5.0e-171 604.7 403 72.2
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 2.5e-170 602.4 401 72.8
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 2.5e-170 602.4 411 74.0
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 2.5e-170 602.4 402 74.1
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 9.4e-170 600.5 402 73.4
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 1.2e-169 600.1 400 73.5
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.1e-169 599.4 385 75.6
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 1.8e-168 596.3 400 73.8
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 2.3e-168 595.9 401 72.6
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 3.0e-168 595.5 401 73.8
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.5e-167 593.2 389 75.1
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.5e-167 593.2 401 71.8
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 4.3e-167 591.7 401 71.6
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.1e-165 587.0 365 77.3
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.1e-165 587.0 407 70.3
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 5.3e-165 584.7 384 75.0
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 5.3e-165 584.7 404 71.3
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 9.1e-165 583.9 405 71.4
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 9.1e-165 583.9 402 70.9
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.5e-164 583.2 402 70.4
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 2.0e-164 582.8 401 70.8
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 3.4e-164 582.0 373 76.4
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 1.0e-163 580.5 402 72.1
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.0e-163 580.5 398 70.6
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.7e-163 579.7 403 72.0
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 2.2e-163 579.3 356 78.1
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 2.9e-163 578.9 402 70.4
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 5.0e-163 578.2 400 72.2
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 6.5e-163 577.8 356 77.8
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 6.5e-163 577.8 387 72.9
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.1e-162 577.0 400 72.0
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 1.9e-162 576.2 400 71.8
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 5.5e-162 574.7 402 69.9
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 9.4e-162 573.9 402 70.4
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 1.2e-161 573.5 388 72.7
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 1.6e-161 573.2 364 74.5
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 2.7e-161 572.4 371 74.1
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 3.6e-161 572.0 402 71.1
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 3.6e-161 572.0 390 72.8
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 4.7e-161 571.6 402 70.4
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 6.1e-161 571.2 401 70.3
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 6.1e-161 571.2 390 73.1
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 1.4e-160 570.1 369 75.9
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.8e-160 569.7 345 78.3
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 2.3e-160 569.3 403 68.5
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 3.0e-160 568.9 401 70.8
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 1.1e-159 567.0 371 75.2
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.0e-159 566.2 370 74.3
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 2.6e-159 565.8 378 72.8
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 4.4e-159 565.1 405 68.6
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 7.4e-159 564.3 357 75.1
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 7.4e-159 564.3 402 68.4
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 7.4e-159 564.3 369 74.0
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.3e-158 563.5 356 75.0
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 1.3e-158 563.5 409 68.5
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.7e-158 563.1 392 69.6
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.7e-158 563.1 392 69.6
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.7e-158 563.1 372 74.5
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 2.2e-158 562.8 399 70.2
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 2.2e-158 562.8 428 66.6
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 2.8e-158 562.4 392 69.6
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 2.8e-158 562.4 372 72.3
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 3.7e-158 562.0 392 69.4
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 3.7e-158 562.0 371 73.6
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 4.8e-158 561.6 356 74.4
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 6.3e-158 561.2 355 75.5
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.1e-157 560.5 356 74.2
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 3.1e-157 558.9 400 68.0
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 4.1e-157 558.5 392 68.9
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 5.3e-157 558.1 357 74.5
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 5.3e-157 558.1 355 75.2
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 9.1e-157 557.4 400 67.2
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 2.0e-156 556.2 399 66.7
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 2.0e-156 556.2 396 68.7
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 2.0e-156 556.2 388 70.6
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 4.5e-156 555.1 420 67.1
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 4.5e-156 555.1 381 71.9
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.9e-154 549.7 438 64.8
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 2.5e-154 549.3 382 70.4
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 3.2e-154 548.9 398 67.3
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 1.2e-153 547.0 349 72.8
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.6e-153 546.6 337 76.3
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 2.0e-151 539.7 400 68.8
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 4.4e-151 538.5 392 68.1
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 5.7e-151 538.1 392 68.4
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 3.7e-150 535.4 331 77.0
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 6.3e-150 534.6 380 69.5
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 6.3e-150 534.6 363 72.5
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 1.1e-149 533.9 363 70.8
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 1.4e-149 533.5 327 79.5
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.4e-149 533.5 369 71.3
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 1.8e-149 533.1 364 70.1
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 5.9e-148 528.1 364 70.6
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 5.9e-148 528.1 314 79.6
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.3e-147 526.9 386 68.7
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 2.9e-147 525.8 350 72.3
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 3.8e-147 525.4 361 70.9
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 8.5e-147 524.2 370 66.5
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 3.4e-143 512.3 467 59.5
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 7.5e-143 511.1 401 63.3
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 2.2e-142 509.6 382 66.5
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 3.1e-141 505.8 314 77.1
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.0e-139 500.7 356 70.2
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 5.0e-139 498.4 343 67.9
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.7e-137 492.7 356 69.4
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.7e-137 492.7 402 62.4
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 3.6e-137 492.3 573 48.5
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 3.3e-130 469.2 292 75.7
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 6.1e-129 464.9 371 60.1
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.1e-125 454.1 350 64.0
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 1.9e-114 416.8 267 73.0
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 6.8e-112 408.3 364 60.2
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.5e-74 284.3 194 73.2
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 6.0e-68 262.3 147 81.6
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 8.7e-67 258.5 373 41.6
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 2.3e-59 233.8 195 56.9
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 9.0e-56 221.9 299 45.5
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 4.6e-52 209.5 148 68.9
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 1.5e-50 204.5 191 57.1
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 4.7e-44 183.0 112 78.6
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 2.0e-39 167.5 369 31.7
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 5.0e-38 162.9 112 71.4
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.1e-32 145.2 215 40.5
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 4.7e-28 129.8 84 71.4
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 2.8e-25 120.6 66 78.8
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 2.1e-12 77.8 53 71.7
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 2.0e-10 71.2 94 41.5
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 2.0e-10 71.2 45 68.9
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 3.2e-08 63.9 58 53.4


User provided reference genes

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