Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 6.0e-239 830.5 428 100.0
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 6.1e-143 511.5 425 63.8
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 2.1e-135 486.5 427 61.8
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 6.1e-135 485.0 428 61.0
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.5e-133 480.3 428 60.5
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 9.8e-133 477.6 427 60.2
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 1.7e-132 476.9 427 60.0
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 3.7e-132 475.7 421 59.9
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.8e-131 473.4 432 59.5
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 8.6e-129 464.5 426 59.6
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 1.5e-128 463.8 426 59.2
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 1.9e-128 463.4 424 58.0
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 2.5e-128 463.0 427 59.3
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 4.3e-128 462.2 433 59.1
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 1.8e-126 456.8 432 56.7
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 1.2e-125 454.1 342 68.7
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 1.7e-124 450.3 430 56.7
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 2.9e-124 449.5 453 53.6
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 4.9e-124 448.7 431 58.0
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 8.3e-124 448.0 426 56.8
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 1.4e-123 447.2 432 56.9
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 1.7e-121 440.3 342 65.8
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 6.6e-121 438.3 431 57.1
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.5e-120 436.4 432 55.6
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 2.5e-120 436.4 403 57.8
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 4.3e-120 435.6 410 58.5
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 5.6e-120 435.3 430 58.1
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 1.2e-119 434.1 403 58.6
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 2.1e-119 433.3 438 56.8
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 2.8e-119 433.0 403 57.3
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 3.6e-119 432.6 430 56.5
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 4.7e-119 432.2 425 54.8
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 1.8e-118 430.3 431 56.8
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 2.3e-118 429.9 441 54.2
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 5.2e-118 428.7 422 55.9
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 8.9e-118 427.9 434 57.6
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 2.6e-117 426.4 423 55.6
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 2.6e-117 426.4 372 58.6
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 5.8e-117 425.2 429 56.4
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 5.8e-117 425.2 425 55.8
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 1.3e-116 424.1 486 52.3
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 2.2e-116 423.3 441 55.6
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 5.4e-115 418.7 425 54.4
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 3.5e-114 416.0 427 53.9
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 1.0e-113 414.5 343 62.7
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 6.6e-113 411.8 427 54.1
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.9e-112 410.2 395 56.2
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 3.3e-112 409.5 351 60.1
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 5.6e-112 408.7 422 53.8
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 7.3e-112 408.3 435 53.8
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 7.3e-112 408.3 353 59.5
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 1.2e-111 407.5 424 53.5
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.6e-111 407.1 427 52.7
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 2.1e-111 406.8 428 53.0
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 1.4e-110 404.1 432 53.2
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 6.8e-110 401.7 402 56.0
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 6.8e-110 401.7 429 52.9
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 3.4e-109 399.4 378 55.6
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 4.4e-109 399.1 430 52.6
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 9.9e-109 397.9 433 51.5
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.4e-107 394.0 321 61.7
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 4.1e-107 392.5 472 48.9
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 1.2e-106 391.0 425 50.4
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 1.0e-105 387.9 431 51.0
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 2.3e-105 386.7 431 50.8
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 5.1e-105 385.6 431 50.8
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 6.6e-105 385.2 431 51.0
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 6.6e-105 385.2 377 57.3
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 6.6e-105 385.2 335 60.6
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 2.5e-104 383.3 431 50.8
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 4.3e-104 382.5 441 50.3
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 1.4e-102 377.5 429 52.4
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 1.5e-101 374.0 440 49.3
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 2.0e-101 373.6 424 51.9
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 4.4e-101 372.5 430 49.8
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 1.3e-100 370.9 452 49.1
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 2.9e-100 369.8 377 53.8
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 1.1e-99 367.9 423 49.2
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 1.6e-98 364.0 341 56.3
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 5.1e-97 359.0 433 50.1
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 1.5e-96 357.5 386 53.1
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.3e-95 354.4 432 47.7
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 6.2e-95 352.1 431 49.4
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 6.9e-94 348.6 427 48.9
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 3.4e-93 346.3 434 49.1
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 8.4e-92 341.7 424 50.0
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.2e-90 337.8 349 54.4
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 7.8e-90 335.1 347 53.3
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 6.6e-89 332.0 254 67.3
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 1.6e-87 327.4 438 45.7
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 2.4e-86 323.6 246 67.5
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 7.1e-83 312.0 424 45.8
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 1.0e-81 308.1 429 43.6
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 5.1e-81 305.8 430 45.8
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 1.3e-73 281.2 319 47.3
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.5e-69 267.7 336 44.9
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 2.6e-69 266.9 191 69.1
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.1e-62 245.0 201 59.2
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 3.2e-59 233.4 336 42.3
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.7e-55 221.1 167 61.7
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 2.0e-53 214.2 352 41.2
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 3.6e-50 203.4 435 33.6
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 3.9e-49 199.9 397 36.0
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.6e-37 160.6 203 50.2
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.7e-37 159.1 139 58.3
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 7.2e-35 152.5 185 50.8
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.2e-34 151.8 129 58.9
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 1.4e-33 148.3 110 64.5
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.0e-33 146.7 123 59.3
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.8e-33 145.6 110 63.6
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 2.0e-32 144.4 285 35.8
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 1.7e-31 141.4 133 54.1
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 1.6e-29 134.8 185 40.5
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 6.1e-26 122.9 123 52.8
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 2.8e-23 114.0 218 34.4
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 2.4e-22 110.9 172 38.4
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.2e-19 100.1 139 42.4
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.8e-17 94.7 77 55.8
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 5.2e-17 93.2 80 58.8
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 2.0e-16 91.3 281 27.4
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 8.3e-15 85.9 63 61.9
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.1e-14 83.6 61 63.9
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 9.2e-14 82.4 291 25.1
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 1.0e-12 79.0 100 49.0
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 1.6e-10 71.6 79 48.1
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 2.6e-08 64.3 54 55.6
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 8.3e-07 59.3 85 36.5


User provided reference genes

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