Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 8.8e-154 547.0 288 100.0
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 3.9e-61 239.2 294 51.7
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 6.7e-61 238.4 287 54.0
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.0e-60 236.9 269 54.6
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.6e-60 236.5 271 53.9
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 3.3e-60 236.1 288 52.4
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.7e-60 235.3 288 53.1
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.7e-59 233.8 294 50.3
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 6.3e-59 231.9 287 53.3
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 6.3e-59 231.9 288 52.1
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.1e-58 231.1 270 53.7
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.4e-58 230.7 289 51.2
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.4e-58 229.9 287 53.0
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 4.1e-58 229.2 288 50.7
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.1e-58 228.0 287 52.6
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.1e-58 228.0 288 52.1
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 5.9e-57 225.3 275 51.6
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 7.7e-57 224.9 286 51.0
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 7.7e-57 224.9 288 52.1
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 7.7e-57 224.9 288 51.4
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 6.5e-56 221.9 289 51.9
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.1e-55 221.1 287 50.9
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.1e-55 221.1 287 50.9
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.7e-54 216.5 293 50.5
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.6e-54 216.1 289 48.4
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 4.7e-54 215.7 290 53.4
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 3.0e-53 213.0 286 50.0
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 3.0e-53 213.0 288 48.3
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.2e-52 211.1 288 47.9
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 5.7e-52 208.8 289 47.8
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 6.3e-51 205.3 294 49.7
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.4e-50 203.4 285 50.9
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 9.1e-50 201.4 288 48.6
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 9.1e-50 201.4 284 47.9
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 2.7e-49 199.9 297 48.5
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.7e-48 197.2 276 48.2
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 3.2e-47 193.0 288 46.2
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.2e-47 192.6 267 48.3
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 5.5e-47 192.2 289 46.0
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.1e-46 190.3 250 52.0
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 3.0e-45 186.4 288 44.4
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 5.2e-45 185.7 286 43.4
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.2e-44 184.5 295 49.5
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 7.5e-44 181.8 289 44.6
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.6e-41 174.1 273 46.5
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 2.7e-41 173.3 278 45.0
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.0e-40 171.4 269 43.5
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.7e-40 170.6 274 44.5
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 5.0e-40 169.1 292 46.2
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 8.5e-40 168.3 294 42.2
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.5e-39 167.5 273 45.4
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.6e-38 164.1 287 42.5
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.6e-38 164.1 287 42.5
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.8e-38 163.3 287 42.9
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.8e-37 160.6 287 42.5
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 2.0e-36 157.1 263 45.6
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 7.5e-36 155.2 290 41.7
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 9.8e-36 154.8 290 43.1
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 4.9e-35 152.5 290 40.7
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.8e-34 150.6 264 42.8
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.4e-34 150.2 269 42.0
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.9e-33 145.6 294 42.9
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 5.9e-33 145.6 290 40.0
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.3e-32 143.7 304 40.5
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 2.9e-32 143.3 250 44.0
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 5.0e-32 142.5 278 40.3
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 6.6e-32 142.1 293 41.3
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.5e-31 140.2 277 39.4
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 4.7e-30 136.0 290 38.3
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.8e-29 134.0 290 37.9
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.3e-29 133.7 218 44.5
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-28 131.0 233 42.9
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.4e-28 129.8 274 39.4
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 4.4e-28 129.4 249 41.8
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.9e-27 126.7 291 37.5
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 2.7e-25 120.2 277 36.5
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.7e-25 120.2 195 45.1
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 2.3e-24 117.1 133 55.6
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.0e-24 116.7 289 37.4
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.1e-23 114.8 132 55.3
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-23 114.8 132 55.3
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-23 114.8 132 55.3
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.1e-23 114.8 229 39.7
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.3e-23 113.2 137 54.0
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.3e-23 112.1 129 53.5
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.1e-22 110.5 288 36.5
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.8e-21 107.5 283 35.3
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 5.2e-21 105.9 242 38.4
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.2e-20 104.8 248 35.9
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 2.6e-20 103.6 285 32.6
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.4e-20 103.2 261 33.0
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 3.4e-20 103.2 261 33.0
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 5.8e-20 102.4 272 36.0
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 3.7e-19 99.8 279 33.7
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.1e-18 98.2 285 33.7
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.9e-18 97.4 277 33.9
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.9e-18 97.4 273 34.4
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.4e-18 97.1 267 34.5
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 4.1e-18 96.3 101 59.4
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 5.4e-18 95.9 89 61.8
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 7.0e-18 95.5 105 53.3
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 9.2e-18 95.1 231 35.9
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.2e-17 94.7 267 35.6
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.2e-17 94.7 136 44.1
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 2.0e-17 94.0 73 68.5
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.8e-17 92.0 188 39.9
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 7.8e-17 92.0 283 35.3
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.0e-16 91.7 266 35.0
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 3.9e-16 89.7 268 35.1
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 5.0e-16 89.4 240 35.4
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.5e-15 87.8 72 70.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.5e-15 87.8 263 31.2
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.9e-15 87.4 100 54.0
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 7.3e-15 85.5 298 31.9
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.2e-14 84.7 127 47.2
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 2.1e-14 84.0 72 66.7
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 2.1e-14 84.0 291 32.0
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 3.6e-14 83.2 195 37.9
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.6e-14 83.2 285 29.5
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.7e-14 82.8 262 32.8
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 8.1e-14 82.0 270 34.8
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.1e-13 81.6 278 32.7
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.1e-13 81.6 296 32.8
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.4e-13 81.3 68 70.6
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.3e-13 80.5 246 30.5
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 4.0e-13 79.7 68 69.1
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 4.0e-13 79.7 271 33.6
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.0e-13 79.7 95 47.4
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.2e-13 79.3 242 31.8
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.2e-12 78.2 292 31.5
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.0e-12 77.4 193 35.8
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 2.6e-12 77.0 88 54.5
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 5.8e-12 75.9 68 66.2
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 5.8e-12 75.9 178 38.2
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 9.8e-12 75.1 278 31.3
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.9e-11 73.6 264 29.5
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.9e-11 72.8 228 32.0
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 4.9e-11 72.8 89 42.7
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.1e-10 71.6 85 47.1
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.1e-10 71.6 252 30.6
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.9e-10 70.9 135 41.5
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 2.4e-10 70.5 271 31.7
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 3.2e-10 70.1 228 30.7
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 9.2e-10 68.6 281 29.9
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 9.2e-10 68.6 223 32.7
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 2.1e-09 67.4 99 42.4
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.7e-09 67.0 133 36.8
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.7e-09 67.0 95 42.1
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 2.7e-09 67.0 66 50.0
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 4.6e-09 66.2 146 30.8
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 4.6e-09 66.2 78 48.7
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 6.0e-09 65.9 148 33.8
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.8e-09 65.5 275 30.5
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.3e-08 64.7 75 48.0
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.3e-08 64.7 259 29.0
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.3e-08 64.7 65 52.3
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 3.0e-08 63.5 273 26.7
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 3.0e-08 63.5 168 35.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.9e-08 63.2 68 51.5
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.9e-08 63.2 119 37.8
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 8.6e-08 62.0 246 29.3
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 8.6e-08 62.0 249 32.1
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 2.5e-07 60.5 247 30.8
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 5.6e-07 59.3 179 30.2
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 7.3e-07 58.9 121 38.0
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.2e-06 58.2 248 27.4
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.1e-06 57.4 277 27.1
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 2.1e-06 57.4 286 28.7
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 6.2e-06 55.8 156 30.1


User provided reference genes

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