Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 5.7e-202 707.6 416 100.0
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 2.8e-68 263.5 444 45.9
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 4.8e-68 262.7 454 50.4
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 9.1e-67 258.5 432 46.1
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 3.8e-65 253.1 440 48.4
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 2.5e-64 250.4 440 43.2
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 5.5e-64 249.2 442 45.7
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 1.6e-63 247.7 441 45.8
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.6e-63 246.5 444 45.0
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 4.8e-60 236.1 422 42.9
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 1.4e-59 234.6 460 50.9
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.2e-58 231.5 422 40.3
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 7.7e-58 228.8 449 43.2
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.7e-57 227.6 422 39.8
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 1.7e-57 227.6 453 43.5
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 2.9e-57 226.9 428 43.0
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 8.5e-57 225.3 430 45.1
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 2.5e-56 223.8 386 45.1
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 2.5e-56 223.8 422 42.9
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 1.6e-55 221.1 401 47.9
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.1e-55 219.2 418 39.2
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 8.0e-55 218.8 417 43.9
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 1.4e-54 218.0 442 42.3
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 2.0e-53 214.2 446 40.6
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.3e-52 211.5 449 41.9
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 2.8e-52 210.3 438 43.4
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 6.3e-52 209.1 422 46.7
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 7.0e-51 205.7 435 42.5
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.5e-50 203.4 449 45.2
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 5.9e-50 202.6 416 40.6
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 8.5e-49 198.7 450 44.9
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 8.5e-49 198.7 435 38.6
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.1e-48 198.4 449 45.4
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 2.5e-48 197.2 449 45.0
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.2e-48 195.7 452 45.1
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 3.6e-47 193.4 479 39.2
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 6.1e-47 192.6 319 41.1
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 3.0e-46 190.3 448 36.2
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 3.4e-45 186.8 405 42.5
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.7e-44 184.5 409 43.8
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 3.7e-44 183.3 453 38.4
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.4e-43 180.6 404 38.6
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 3.1e-43 180.3 400 40.2
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 1.0e-41 175.3 426 38.7
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 1.0e-41 175.3 420 39.8
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 1.0e-41 175.3 342 40.9
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.3e-41 174.9 406 36.2
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 2.3e-41 174.1 395 39.2
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.3e-41 174.1 405 44.2
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 3.8e-41 173.3 449 33.9
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 3.8e-41 173.3 396 40.4
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 1.9e-40 171.0 407 36.1
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 1.9e-40 171.0 455 40.4
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 3.2e-40 170.2 420 38.6
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 1.6e-39 167.9 424 39.4
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 4.7e-39 166.4 415 37.3
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 1.0e-38 165.2 404 36.1
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.8e-38 164.5 430 39.5
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 2.3e-38 164.1 345 40.9
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 5.2e-38 162.9 311 39.9
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 6.3e-36 156.0 409 41.6
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 2.4e-35 154.1 398 35.7
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 3.1e-35 153.7 400 36.8
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 3.1e-35 153.7 327 42.5
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 7.0e-35 152.5 316 40.8
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 2.7e-34 150.6 433 42.5
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 3.5e-34 150.2 365 44.7
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 5.9e-34 149.4 392 36.2
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.7e-33 147.9 418 36.6
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 3.8e-33 146.7 222 42.8
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 6.6e-33 146.0 446 31.4
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 5.6e-32 142.9 469 34.3
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 5.6e-32 142.9 329 38.9
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 5.6e-32 142.9 387 40.1
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 1.0e-30 138.7 389 45.0
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.8e-30 137.9 324 36.1
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 2.3e-30 137.5 401 35.9
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 4.0e-30 136.7 405 37.5
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 5.2e-30 136.3 385 31.2
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 8.9e-30 135.6 307 39.4
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.2e-29 135.2 410 38.3
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 2.0e-29 134.4 313 38.0
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.6e-29 134.0 397 31.7
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 2.6e-29 134.0 387 32.8
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 2.2e-28 131.0 348 39.4
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 2.4e-27 127.5 405 41.7
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 9.2e-27 125.6 198 40.4
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 2.7e-26 124.0 321 42.7
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 1.0e-25 122.1 402 29.6
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 3.0e-25 120.6 118 54.2
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 3.0e-25 120.6 450 35.6
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 2.5e-24 117.5 303 37.3
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 2.5e-24 117.5 289 34.9
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 7.5e-21 105.9 321 36.4
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 7.5e-21 105.9 315 38.1
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 7.5e-21 105.9 315 38.1
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 9.8e-21 105.5 122 49.2
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 2.2e-20 104.4 402 33.6
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 3.7e-20 103.6 354 33.9
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.9e-20 103.2 248 38.3
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 8.3e-20 102.4 320 30.6
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.4e-19 101.7 386 28.2
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 2.4e-19 100.9 315 34.0
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 2.4e-19 100.9 315 35.6
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 2.4e-19 100.9 315 35.6
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 2.4e-19 100.9 315 34.0
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 4.1e-19 100.1 316 34.5
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 7.0e-19 99.4 314 36.0
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 7.0e-19 99.4 357 35.3
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 2.3e-17 94.4 317 35.3
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 8.6e-17 92.4 293 31.1
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.1e-16 92.0 299 33.1
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 3.3e-16 90.5 117 53.0
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 4.3e-16 90.1 322 33.9
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 4.3e-16 90.1 314 35.0
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 7.3e-16 89.4 314 34.1
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 2.1e-15 87.8 314 34.1
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 2.1e-15 87.8 314 34.1
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 3.6e-15 87.0 314 33.8
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 8.1e-15 85.9 283 30.7
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 1.4e-14 85.1 138 54.3
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.4e-14 85.1 314 33.8
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 1.8e-14 84.7 318 34.3
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 4.0e-14 83.6 151 41.1
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 5.2e-14 83.2 300 38.0
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 3.4e-13 80.5 273 29.3
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 1.7e-12 78.2 118 39.0
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 2.4e-11 74.3 136 39.0
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 3.2e-11 73.9 373 25.5
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 3.5e-10 70.5 308 28.9
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 4.6e-10 70.1 310 34.2
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.7e-09 68.2 311 28.3
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 3.9e-09 67.0 311 27.0
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 3.9e-09 67.0 142 38.7
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.1e-09 66.6 170 34.1
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 1.9e-08 64.7 306 30.4
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 1.9e-08 64.7 275 28.0
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 5.6e-08 63.2 36 86.1
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 5.6e-08 63.2 36 86.1
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 1.4e-06 58.5 226 29.6
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 4.0e-06 57.0 44 54.5
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 6.8e-06 56.2 416 25.0


User provided reference genes

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