Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 9.9e-158 560.1 282 100.0
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 4.5e-118 428.3 283 76.0
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 5.9e-118 427.9 285 77.5
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.7e-117 426.4 283 74.9
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 5.0e-117 424.9 283 75.6
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.9e-116 422.9 285 76.5
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 7.9e-115 417.5 288 75.3
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.0e-114 417.2 288 73.3
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.9e-114 415.2 288 72.9
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 8.8e-114 414.1 288 73.6
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.5e-113 412.5 288 72.6
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 5.7e-113 411.4 288 72.2
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 7.4e-113 411.0 288 73.6
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 7.4e-113 411.0 289 73.7
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.7e-112 408.7 284 73.2
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 4.8e-112 408.3 286 73.1
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.4e-111 406.8 286 73.1
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.8e-111 406.4 286 74.8
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 2.4e-111 406.0 285 72.3
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 1.2e-110 403.7 288 72.2
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.0e-110 402.9 288 71.2
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 2.0e-110 402.9 283 70.3
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 3.4e-110 402.1 286 71.3
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 7.7e-110 401.0 282 70.6
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 1.7e-109 399.8 286 71.3
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 2.2e-109 399.4 283 70.3
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 4.2e-108 395.2 287 71.1
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 5.5e-108 394.8 283 69.3
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.2e-107 393.7 286 69.6
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 2.1e-107 392.9 283 68.6
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 3.6e-107 392.1 288 70.1
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 3.6e-107 392.1 249 77.1
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 3.6e-107 392.1 288 69.8
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 2.3e-106 389.4 285 70.2
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.0e-105 386.3 296 68.9
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 2.6e-105 386.0 284 69.0
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.3e-104 383.6 286 68.2
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.1e-103 379.0 286 67.5
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 5.3e-103 378.3 265 70.9
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.5e-102 376.7 282 66.7
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.6e-102 375.9 283 65.0
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 2.6e-102 375.9 280 68.2
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 3.5e-102 375.6 278 68.3
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 4.5e-102 375.2 291 69.4
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 5.9e-102 374.8 284 65.8
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 1.0e-101 374.0 289 66.1
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 2.9e-101 372.5 289 66.1
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 2.9e-101 372.5 301 64.5
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 3.8e-101 372.1 256 73.4
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 8.5e-101 370.9 284 69.7
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.9e-100 369.8 251 73.3
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.2e-100 367.9 282 64.2
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.6e-99 366.7 282 67.0
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 2.1e-99 366.3 281 67.3
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.0e-99 364.4 282 63.8
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 1.4e-98 363.6 245 73.1
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 4.0e-98 362.1 287 63.1
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 5.2e-98 361.7 238 72.7
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.5e-97 360.1 287 62.4
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.5e-97 360.1 287 62.4
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 1.5e-97 360.1 286 64.7
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 3.3e-97 359.0 289 65.1
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 4.4e-97 358.6 274 68.2
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 7.4e-97 357.8 281 64.1
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 9.7e-97 357.5 287 62.0
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 4.8e-96 355.1 262 71.4
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 4.8e-96 355.1 302 61.9
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 6.3e-96 354.8 286 63.6
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.3e-96 354.8 264 65.9
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 8.2e-96 354.4 286 65.0
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 8.2e-96 354.4 293 66.2
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.4e-95 353.6 268 67.9
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 2.4e-95 352.8 296 63.5
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 3.1e-95 352.4 240 72.1
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 4.1e-95 352.1 286 63.6
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.6e-94 350.1 286 64.7
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.6e-94 350.1 222 76.1
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 2.0e-94 349.7 287 63.4
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 3.5e-94 349.0 222 76.1
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 4.5e-94 348.6 287 65.2
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 7.7e-94 347.8 293 64.8
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.0e-93 347.4 287 63.1
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.3e-93 347.1 218 76.1
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 2.5e-92 342.8 286 61.9
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 3.2e-92 342.4 243 70.8
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 3.0e-90 335.9 266 63.2
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.2e-89 334.0 215 76.3
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 5.7e-89 331.6 245 67.8
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.3e-88 330.5 265 62.3
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 1.4e-87 327.0 284 60.9
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 9.1e-87 324.3 295 62.7
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.2e-86 323.9 310 58.4
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 7.7e-86 321.2 240 66.2
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.5e-84 317.0 291 61.2
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.5e-84 316.2 241 64.7
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 2.5e-84 316.2 250 60.4
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 6.8e-82 308.1 293 57.0
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.2e-81 307.4 239 70.3
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 8.6e-77 291.2 183 77.6
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 6.1e-75 285.0 267 58.1
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 4.0e-74 282.3 326 50.9
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 4.9e-72 275.4 175 77.1
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 3.2e-71 272.7 231 56.3
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 3.9e-69 265.8 222 57.2
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 5.0e-69 265.4 169 75.7
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 7.3e-68 261.5 253 54.2
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 6.2e-67 258.5 227 55.5
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 2.9e-64 249.6 229 53.3
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-62 244.2 263 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 7.3e-60 235.0 249 47.8
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 6.2e-59 231.9 245 50.6
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 5.2e-58 228.8 253 49.4
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.3e-56 224.2 186 57.5
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.3e-53 214.2 237 53.2
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 2.9e-48 196.4 167 61.1
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.6e-46 190.7 112 82.1
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 6.0e-46 188.7 228 49.6
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 4.9e-40 169.1 129 66.7
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.2e-38 164.5 224 42.0
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.6e-35 154.1 128 61.7
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 5.4e-31 139.0 196 41.3
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 9.3e-31 138.3 133 52.6
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 1.9e-28 130.6 74 83.8
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 4.0e-26 122.9 81 67.9
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 4.0e-26 122.9 81 66.7
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 3.4e-25 119.8 81 66.7
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 3.2e-23 113.2 82 65.9
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 4.8e-19 99.4 197 33.0
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.1e-18 98.2 141 34.8
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 3.1e-18 96.7 99 50.5
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.0e-18 96.3 99 49.5
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.0e-18 96.3 99 49.5
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.5e-17 94.4 99 48.5
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.0e-17 94.0 99 48.5
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 4.9e-16 89.4 80 60.0
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 9.3e-15 85.1 102 52.0
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 4.6e-14 82.8 126 43.7
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 3.9e-13 79.7 54 74.1
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 8.7e-13 78.6 60 68.3
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 1.1e-12 78.2 68 58.8
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 4.3e-12 76.3 52 69.2


User provided reference genes

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