Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1712 Punica granatum HOM05D005678 ORTHO05D006894 1.8e-145 519.2 268 100.0
ClCG08G012760 Citrullus lanatus HOM05D005678 ORTHO05D006894 5.3e-36 155.6 204 50.0
MELO3C011199.2 Cucumis melo HOM05D005678 ORTHO05D006894 2.6e-35 153.3 200 50.0
Sc09g0007960 Simmondsia chinensis HOM05D005678 ORTHO05D006894 3.8e-34 149.4 86 79.1
Dinv16205 Davidia involucrata HOM05D005678 ORTHO05D006894 6.5e-34 148.7 198 47.5
CsaV3_2G031490 Cucumis sativus L. HOM05D005678 ORTHO05D006894 1.9e-33 147.1 200 49.0
QL12p024739 Quercus lobata HOM05D005678 ORTHO05D006894 4.2e-33 146.0 195 49.2
Prupe.1G462000 Prunus persica HOM05D005678 ORTHO05D006894 5.5e-33 145.6 86 79.1
CiPaw.07G214300 Carya illinoinensis HOM05D005678 ORTHO05D006894 7.2e-33 145.2 117 61.5
Ciclev10009502m.g Citrus clementina HOM05D005678 ORTHO05D006894 7.2e-33 145.2 89 75.3
Sc09g0007970 Simmondsia chinensis HOM05D005678 ORTHO05D006894 2.7e-32 143.3 196 48.5
THA.LOC104801628 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 4.7e-32 142.5 195 46.2
Actinidia03578 Actinidia chinensis HOM05D005678 ORTHO05D006894 6.1e-32 142.1 126 57.9
Eucgr.C02102 Eucalyptus grandis HOM05D005678 ORTHO05D006894 8.0e-32 141.7 104 69.2
GSVIVG01035539001 Vitis vinifera HOM05D005678 ORTHO05D006894 8.0e-32 141.7 195 49.2
CiPaw.08G018100 Carya illinoinensis HOM05D005678 ORTHO05D006894 1.0e-31 141.4 203 46.3
vmacro00604 Vaccinium macrocarpon HOM05D005678 ORTHO05D006894 2.3e-31 140.2 144 56.2
THA.LOC104803592 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 3.0e-31 139.8 200 47.5
Lj5g0006596 Lotus japonicus HOM05D005678 ORTHO05D006894 4.0e-31 139.4 181 49.7
CANSAT25G2809 Cannabis sativa HOM05D005678 ORTHO05D006894 5.2e-31 139.0 87 72.4
HanXRQChr06g0173291 Helianthus annuus HOM05D005678 ORTHO05D006894 1.2e-30 137.9 196 44.9
Manes.03G002700 Manihot esculenta HOM05D005678 ORTHO05D006894 1.5e-30 137.5 199 46.2
Sed0002806 Sechium edule HOM05D005678 ORTHO05D006894 1.5e-30 137.5 197 47.2
arahy.Tifrunner.gnm1.ann1.V3TD4F Arachis hypogaea HOM05D005678 ORTHO05D006894 2.0e-30 137.1 188 49.5
arahy.Tifrunner.gnm1.ann1.XT6XQE Arachis hypogaea HOM05D005678 ORTHO05D006894 2.0e-30 137.1 188 49.5
TAR383G0152 Trochodendron aralioides HOM05D005678 ORTHO05D006894 2.0e-30 137.1 195 44.1
Hma1.2p1_0102F.1_g049830 Hydrangea macrophylla HOM05D005678 ORTHO05D006894 2.6e-30 136.7 132 53.8
Aa31LG2G19000 Aethionema arabicum HOM05D005678 ORTHO05D006894 3.4e-30 136.3 87 72.4
Migut.A00794 Erythranthe guttata HOM05D005678 ORTHO05D006894 5.7e-30 135.6 85 69.4
Cc08_g14330 Coffea canephora HOM05D005678 ORTHO05D006894 7.5e-30 135.2 178 48.3
Duzib187G0563 Durio zibethinus HOM05D005678 ORTHO05D006894 7.5e-30 135.2 195 46.2
AL4G14870 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 1.3e-29 134.4 83 73.5
AT2G24440 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 2.8e-29 133.3 83 73.5
MD00G1173100 Malus domestica HOM05D005678 ORTHO05D006894 3.7e-29 132.9 95 65.3
MD08G1134200 Malus domestica HOM05D005678 ORTHO05D006894 3.7e-29 132.9 95 65.3
Thecc.09G005500 Theobroma cacao HOM05D005678 ORTHO05D006894 3.7e-29 132.9 197 46.2
Carub.0004s0379 Capsella rubella HOM05D005678 ORTHO05D006894 4.8e-29 132.5 83 71.1
Cpa.g.sc244.11 Carica papaya HOM05D005678 ORTHO05D006894 4.8e-29 132.5 158 49.4
Oeu009186.1 Olea europaea HOM05D005678 ORTHO05D006894 4.8e-29 132.5 97 66.0
ECA246G1984 Erigeron canadensis HOM05D005678 ORTHO05D006894 6.3e-29 132.1 101 65.3
Lalb_Chr24g0402441 Lupinus albus HOM05D005678 ORTHO05D006894 8.3e-29 131.7 87 69.0
A08p18690 Brassica napus HOM05D002168 ORTHO05D002277 1.1e-28 131.3 89 68.5
BcaC09g51917 Brassica carinata HOM05D005678 ORTHO05D006894 1.4e-28 131.0 196 46.9
C01p07670 Brassica napus HOM05D005678 ORTHO05D006894 1.4e-28 131.0 196 46.9
BolC1t00747H Brassica oleracea HOM05D005678 ORTHO05D006894 1.4e-28 131.0 196 46.9
CARHR117620 Cardamine hirsuta HOM05D005678 ORTHO05D006894 1.4e-28 131.0 86 67.4
Potri.018G004901 Populus trichocarpa HOM05D005678 ORTHO05D006894 4.1e-28 129.4 104 60.6
Sabra18G0010600 Salix brachista HOM05D005678 ORTHO05D006894 5.3e-28 129.0 85 67.1
Gohir.D05G068200 Gossypium hirsutum HOM05D005678 ORTHO05D006894 7.0e-28 128.6 169 48.5
MSTRG.1882 Avicennia marina HOM05D005678 ORTHO05D006894 1.6e-27 127.5 85 67.1
Gorai.009G069000 Gossypium raimondii HOM05D005678 ORTHO05D006894 1.6e-27 127.5 171 47.4
PSO063G6472 Papaver somniferum HOM05D005678 ORTHO05D006894 2.0e-27 127.1 158 50.6
HanXRQChr17g0536371 Helianthus annuus HOM05D005678 ORTHO05D006894 2.7e-27 126.7 199 44.7
Gohir.A05G065600 Gossypium hirsutum HOM05D005678 ORTHO05D006894 4.5e-27 125.9 195 44.1
Sp7g29220 Schrenkiella parvula HOM05D005678 ORTHO05D006894 4.5e-27 125.9 196 44.4
A09p56300 Brassica napus HOM05D005678 ORTHO05D006894 5.9e-27 125.6 87 66.7
BraA09t41025Z Brassica rapa HOM05D005678 ORTHO05D006894 5.9e-27 125.6 87 66.7
SGA_v2.0_scaffold146G36252 Striga asiatica HOM05D005678 ORTHO05D006894 7.7e-27 125.2 195 43.6
BraA01t00642Z Brassica rapa HOM05D005678 ORTHO05D006894 1.0e-26 124.8 195 44.1
A01p06940 Brassica napus HOM05D005678 ORTHO05D006894 1.3e-26 124.4 195 44.1
BolC8t51499H Brassica oleracea HOM05D005678 ORTHO05D006894 1.3e-26 124.4 87 65.5
C08p39250 Brassica napus HOM05D005678 ORTHO05D006894 1.7e-26 124.0 87 65.5
BolC3t21115H Brassica oleracea HOM05D005678 ORTHO05D006894 1.7e-26 124.0 114 58.8
Sp4g03460 Schrenkiella parvula HOM05D005678 ORTHO05D006894 1.7e-26 124.0 84 67.9
Glyma.14G133100 Glycine max HOM05D005678 ORTHO05D006894 2.2e-26 123.6 111 54.1
Phvul.001G058200 Phaseolus vulgaris HOM05D005678 ORTHO05D006894 2.2e-26 123.6 86 64.0
Ca_12878_v3 Cicer arietinum L. HOM05D005678 ORTHO05D006894 2.9e-26 123.2 104 60.6
PSO170G6167 Papaver somniferum HOM05D005678 ORTHO05D006894 2.9e-26 123.2 153 47.7
SHI21122 Sapria himalayana HOM05D005678 ORTHO05D006894 3.8e-26 122.9 78 71.8
Glyma.17G201900 Glycine max HOM05D005678 ORTHO05D006894 5.0e-26 122.5 111 55.9
BcaB06g27969 Brassica carinata HOM05D005678 ORTHO05D006894 6.5e-26 122.1 87 65.5
Lsat_1_v5_gn_3_22720 Lactuca sativa HOM05D005678 ORTHO05D006894 6.5e-26 122.1 194 44.3
Atru.chr7.2621 Acer truncatum HOM05D005678 ORTHO05D006894 8.5e-26 121.7 198 41.4
TPR.G12081 Trifolium pratense HOM05D005678 ORTHO05D006894 8.5e-26 121.7 196 41.3
BcaC02g08455 Brassica carinata HOM05D005678 ORTHO05D006894 1.1e-25 121.3 87 65.5
C04p54050 Brassica napus HOM05D005678 ORTHO05D006894 1.1e-25 121.3 87 65.5
Nitab4.5_0001356g0020 Nicotiana tabacum HOM05D005678 ORTHO05D006894 1.9e-25 120.6 183 43.2
AT4G31360 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 2.5e-25 120.2 193 44.0
Carub.0007s0920 Capsella rubella HOM05D005678 ORTHO05D006894 4.2e-25 119.4 188 45.7
FAN15G3337 Fragaria x ananassa HOM05D005678 ORTHO05D006894 5.5e-25 119.0 196 43.4
A04p18760 Brassica napus HOM05D005678 ORTHO05D006894 9.4e-25 118.2 85 64.7
BraA04t17485Z Brassica rapa HOM05D005678 ORTHO05D006894 1.2e-24 117.9 87 63.2
Thhalv10000334m.g Eutrema salsugineum HOM05D005678 ORTHO05D006894 1.2e-24 117.9 83 66.3
Nitab4.5_0008905g0030 Nicotiana tabacum HOM05D005678 ORTHO05D006894 1.2e-24 117.9 183 42.6
Sopen08g029020 Solanum pennellii HOM05D005678 ORTHO05D006894 1.2e-24 117.9 105 58.1
AL7G20710 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 2.1e-24 117.1 195 40.0
Zm00001eb409020 Zea mays HOM05D005678 ORTHO05D006894 2.1e-24 117.1 86 60.5
Os11g0704000 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 3.6e-24 116.3 86 59.3
MBI16_g25208_MAGBIO Magnolia biondii HOM05D005678 ORTHO05D006894 6.1e-24 115.5 192 40.1
RcHm_v2.0_Chr6g0312181 Rosa chinensis HOM05D005678 ORTHO05D006894 1.0e-23 114.8 195 43.6
TWI34G1196 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 1.8e-23 114.0 196 41.3
MD15G1109600 Malus domestica HOM05D005678 ORTHO05D006894 2.3e-23 113.6 222 43.2
SalBow6G4551 Salvia bowleyana HOM05D005678 ORTHO05D006894 2.3e-23 113.6 150 44.7
Os05g0250500 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 4.0e-23 112.8 81 61.7
PGSC0003DMG400003060 Solanum tuberosum HOM05D005678 ORTHO05D006894 4.0e-23 112.8 102 55.9
FvH4_2g30710 Fragaria vesca HOM05D005678 ORTHO05D006894 6.8e-23 112.1 195 41.5
FAN20G0695 Fragaria x ananassa HOM05D005678 ORTHO05D006894 6.8e-23 112.1 196 44.4
FAN24G1799 Fragaria x ananassa HOM05D000178 ORTHO05D001582 6.8e-23 112.1 199 41.2
FAN27G1837 Fragaria x ananassa HOM05D005678 ORTHO05D006894 6.8e-23 112.1 196 43.9
Psat6g032200 Pisum sativum HOM05D005678 ORTHO05D006894 1.2e-22 111.3 198 42.4
Duzib168G0107 Durio zibethinus HOM05D005678 ORTHO05D006894 1.5e-22 110.9 200 43.0
COL.COLO4_19050 Corchorus olitorius HOM05D005678 ORTHO05D006894 2.0e-22 110.5 196 41.3
BcaC07g40931 Brassica carinata HOM05D005678 ORTHO05D006894 5.7e-22 109.0 77 66.2
VMungo0647G1216 Vigna mungo HOM05D005678 ORTHO05D006894 9.8e-22 108.2 185 38.9
Sabra18G0000200 Salix brachista HOM05D005678 ORTHO05D006894 1.7e-21 107.5 130 43.8
CAN.G859.10 Capsicum annuum HOM05D005678 ORTHO05D006894 2.2e-21 107.1 184 44.0
Aqoxy7G03048 Aquilegia oxysepala HOM05D005678 ORTHO05D006894 3.7e-21 106.3 98 51.0
BolC4t26956H Brassica oleracea HOM05D005678 ORTHO05D006894 4.8e-21 105.9 202 40.1
Pp3c5_240 Physcomitrium patens HOM05D005678 ORTHO05D006894 4.8e-21 105.9 114 45.6
SEGI_38696 Sequoiadendron giganteum HOM05D005678 ORTHO05D006894 8.3e-21 105.1 87 52.9
Sabra06G0213900 Salix brachista HOM05D005678 ORTHO05D006894 4.1e-20 102.8 210 38.1
SGA_v2.0_scaffold144G35960 Striga asiatica HOM05D000250 ORTHO05D002850 4.1e-20 102.8 98 45.9
TWI63G1651 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 9.1e-20 101.7 197 39.6
Pp3c6_27420 Physcomitrium patens HOM05D005678 ORTHO05D006894 2.9e-18 96.7 217 33.6
BcaC01g01095 Brassica carinata HOM05D005678 ORTHO05D006894 3.8e-18 96.3 68 67.6
Aa31LG7G11430 Aethionema arabicum HOM05D005678 ORTHO05D006894 1.1e-17 94.7 207 38.6
Mapoly0188s0010 Marchantia polymorpha HOM05D005678 ORTHO05D006894 1.9e-17 94.0 91 44.0
HPP92_027003 Vanilla planifolia HOM05D005678 ORTHO05D006894 4.7e-16 89.4 209 35.9
HPP92_015389 Vanilla planifolia HOM05D005678 ORTHO05D006894 1.8e-15 87.4 137 40.1
Haze_21702 Corylus avellana HOM05D005678 ORTHO05D006894 5.2e-15 85.9 172 39.0
Peaxi162Scf00102g01516 Petunia axillaris HOM05D005678 ORTHO05D006894 8.9e-15 85.1 149 40.3
Hund19398 Selenicereus undatus HOM05D005678 ORTHO05D006894 1.5e-14 84.3 202 33.7
Rhsim09G0030000 Rhododendron simsii HOM05D005678 ORTHO05D006894 2.6e-14 83.6 210 36.7
CARHR239240 Cardamine hirsuta HOM05D005678 ORTHO05D006894 9.8e-14 81.6 176 37.5
HanXRQChr04g0118101 Helianthus annuus HOM05D005678 ORTHO05D006894 2.2e-13 80.5 56 62.5
Cre02.g120301 Chlamydomonas reinhardtii HOM05D005678 ORTHO05D006894 5.4e-12 75.9 61 50.8
Migut.E01115 Erythranthe guttata HOM05D005678 ORTHO05D006894 1.2e-11 74.7 200 33.0
Haze_21709 Corylus avellana HOM05D005678 ORTHO05D006894 5.0e-10 69.3 319 26.6
Migut.E01114 Erythranthe guttata HOM05D005678 ORTHO05D006894 5.0e-10 69.3 80 40.0
MELO3C016433.2 Cucumis melo HOM05D005678 ORTHO05D006894 8.0e-08 62.0 74 50.0
C03p88040 Brassica napus HOM05D005678 ORTHO05D006894 8.9e-07 58.5 78 44.9
PRCOL_00006519 Prasinoderma coloniale HOM05D005678 ORTHO05D006894 3.4e-06 56.6 67 41.8
Haze_21673 Corylus avellana HOM05D000022 ORTHO05D011766 4.4e-06 56.2 52 57.7


User provided reference genes

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